Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_H05
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.10c |sec21||coatomer gamma subunit Sec21 |Schizosacchar...   144   7e-36
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    27   2.4  
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    26   5.5  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.2  
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    25   9.5  
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    25   9.5  

>SPAC57A7.10c |sec21||coatomer gamma subunit Sec21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score =  144 bits (350), Expect = 7e-36
 Identities = 74/182 (40%), Positives = 108/182 (59%), Gaps = 1/182 (0%)
 Frame = +1

Query: 109 KDEDDNSSNPYQNLDKTIVLQETREFNQTLVIPRKCSLILTKILYLLNQGENFTTQEATD 288
           K +DD   + + N+++  V Q+ R FN + + PRK   +L+KI YL+  GE+F  ++AT+
Sbjct: 5   KKDDDGDESIFANVNQVTVTQDARAFNSSSISPRKSRRLLSKIAYLIYTGEHFQEKQATE 64

Query: 289 AFFATTKLFQSKEIMLRRMVYLCIKELSKLAQDVIIVTSSLTKD-MTGKEDLYRAAAIRA 465
            FF  TKLFQ K+  LR+ VY+ IKELS +A+DVI++TSS+ KD  TG+E +YR  AIR+
Sbjct: 65  LFFGITKLFQHKDPSLRQFVYIIIKELSVVAEDVIMITSSIMKDTATGRETIYRPNAIRS 124

Query: 466 LCSITDASMLQAIERYMKQAIVDKNPXXXXXXXXXXXXXXXXXPDLVRRWANEAXETINS 645
           L  + DA+ + AIER +   IVD                     D+V RW NE  + + S
Sbjct: 125 LIRVIDANTVPAIERILTTGIVDPISAVASAALVSAYHLYPVAKDIVSRWNNEVQDAVTS 184

Query: 646 DN 651
            N
Sbjct: 185 HN 186


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -3

Query: 174 FLKYYSFIEILVWVTAVIIFILNISL 97
           FLK + FI ++  +T +++ +L ISL
Sbjct: 284 FLKTFDFIGLVCVITGIVLILLGISL 309


>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -3

Query: 237 YFRKY**TFSRDNERLIKLSCFLKYYSFIEILVWVTAVIIFILNISL 97
           YF  Y  TF  +   L   +   +Y++ I    W+T  ++F++ I+L
Sbjct: 169 YFMNYFVTFPLE---LTTCAITFRYWTDINSCAWITIFLVFVICINL 212


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = -3

Query: 189 IKLSCFLKYYSFIEILVWVTAVIIFILNISL 97
           +    FL+ + F+ I+   T V++F+L +++
Sbjct: 273 VSFCVFLRDFDFVGIVTITTGVVLFLLGLNI 303


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +1

Query: 382 QDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDASMLQAIERYMKQAIVDKN 540
           QD + +   +    TG+ D+  ++A RA+ S       +A+  ++ +   DKN
Sbjct: 396 QDFVDLGVVIANLATGRTDMDMSSAARAIYSTYSREFYKAVLYFVSEVPEDKN 448


>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -3

Query: 375 FTQFFDAKINHTSQ-HDFFG 319
           F Q FD K+ +TSQ  DFFG
Sbjct: 366 FVQLFDTKLFNTSQVIDFFG 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,390,323
Number of Sequences: 5004
Number of extensions: 42909
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)