Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_H04
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    27   1.7  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    26   4.0  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    26   5.2  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    26   5.2  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    26   5.2  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    26   5.2  
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    25   9.1  

>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = +3

Query: 318 KLSKRELEDLYFALLDNNVSLK---KTVNEQRETIKILNTKVQ-RLSTARKNIYGKE 476
           KL   +L+D   ALL+ N SL+   +TV    + ++ +N   +  +  AR+ +  KE
Sbjct: 328 KLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNANYETEMKEARQKLNNKE 384


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -1

Query: 470 AIYIFSSC*QPLNFCVQYFDGFPLFIDSFLQAHVIVE-KGKVKIFQLSLT 324
           A+Y+  S  + L     YF G  LF  +F+ A+ +VE + ++K+ QL  T
Sbjct: 59  ALYLLDSISKNLGAPYTYFFGLHLF-STFMSAYTVVEPRLRLKLDQLLAT 107


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 285 ISKCEFYKRYLVHFALYYYNSSF 217
           +   E   R+++HF  + YNSSF
Sbjct: 143 VQSVEISLRFVLHFVSFLYNSSF 165


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = +3

Query: 291 RELYRTCPTKLSKRELEDLYFALLDNNVSLKKTVNEQRETIKILNTKVQRLSTARKNIYG 470
           RE Y T    L +R  E     LLD+  +++K +NE  E    LNTK   L+    N+  
Sbjct: 539 RESYGTEINNLLERRNE-----LLDDYNNVQKILNESLEASVHLNTKNLELADLNNNLVK 593

Query: 471 KEQN 482
           + Q+
Sbjct: 594 QIQH 597


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 354 ALLDNNVSLKKTVNEQRETIKILNTKVQRLSTARKNIYGKEQN 482
           +++  N++  + +NE RE+   L  K  R   ARK   G +++
Sbjct: 832 SIVRKNIAYSRYINELRESSATLLAKFWRAYNARKTFRGLKKS 874


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -2

Query: 205 YSSIEQNLDHSCEIICGHIIINDTIRQMDYGIR*SISWLFNCILN 71
           Y  +   LDH   I CG  + N  I +++     S  W+F  + N
Sbjct: 165 YGHLHCVLDHYLIIFCGQDLSNSYIEEINIFDLDSGKWVFKSLFN 209


>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 23/85 (27%), Positives = 39/85 (45%)
 Frame = +3

Query: 324 SKRELEDLYFALLDNNVSLKKTVNEQRETIKILNTKVQRLSTARKNIYGKEQNDCCRSVK 503
           S ++LE+    L D+NVSL+K V    E ++  NTK+ +      N    E     R + 
Sbjct: 93  SYKKLEEKTEHLSDDNVSLEKRV----EYLETENTKLVK----TLNSLNSEFLQLLRKIA 144

Query: 504 VMVNEXXELIVELKRENTRLCERVR 578
           + V E  +L  E   + + +   V+
Sbjct: 145 INVKEGRQLTTENSSDTSSMTHPVQ 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,468,823
Number of Sequences: 5004
Number of extensions: 47970
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)