Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_H04
(635 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702... 32 0.44
10_08_0858 - 21108283-21108387,21108820-21108889,21109490-211096... 30 1.8
08_01_0483 - 4243963-4244019,4244243-4245797,4246335-4246651 30 1.8
03_02_0884 + 12160453-12160518,12160598-12160696,12163223-121633... 30 1.8
12_01_0672 + 5731288-5731356,5732032-5732117,5732634-5732724,573... 29 2.3
08_02_0747 - 20728073-20728081,20728167-20728353,20728810-207289... 29 3.1
04_04_1390 - 33184233-33184478,33184601-33184705,33184783-331848... 29 4.1
10_08_0768 - 20445601-20445615,20445883-20445967,20447441-20447655 27 9.4
10_05_0085 - 9005539-9005922,9006207-9006463,9006707-9006883,900... 27 9.4
06_03_0749 + 24133302-24134274,24134585-24135272,24135751-241358... 27 9.4
>10_08_0961 +
21869612-21869773,21869869-21869956,21870047-21870277,
21870371-21870538,21870808-21871001,21871151-21871234,
21871315-21871434,21871621-21871714,21871813-21871973,
21873237-21873313,21873738-21873932,21874487-21874559,
21874635-21874721,21874906-21875043,21875181-21875383,
21875469-21875631,21875861-21875992
Length = 789
Score = 31.9 bits (69), Expect = 0.44
Identities = 20/75 (26%), Positives = 36/75 (48%)
Frame = +3
Query: 339 EDLYFALLDNNVSLKKTVNEQRETIKILNTKVQRLSTARKNIYGKEQNDCCRSVKVMVNE 518
ED+ AL ++N LK+ V+ R+ + I+N K ++ + Q+ VK + E
Sbjct: 160 EDVIVALENHNDYLKEVVDNLRQAVSIINRKHEKY-LDEIEAFKNNQSRELHEVKCLSGE 218
Query: 519 XXELIVELKRENTRL 563
E + EL+ +L
Sbjct: 219 LEESMAELEESRRKL 233
>10_08_0858 -
21108283-21108387,21108820-21108889,21109490-21109646,
21109930-21110062,21110409-21110583,21113353-21113453,
21113620-21113706,21115871-21115931,21116114-21116178,
21116534-21117631
Length = 683
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +3
Query: 405 ETIKILNTKVQRLSTARKNIYGKEQNDCCRSVKVMVNEXXELIVELKRENTRLCE 569
+T+K++N LST R N+ KE N C + E L V + ++C+
Sbjct: 626 QTVKLINENCYYLSTKRNNLKIKEVNYIC---YIYAEELHPLKVMFRNTQAKICQ 677
>08_01_0483 - 4243963-4244019,4244243-4245797,4246335-4246651
Length = 642
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/97 (20%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Frame = +3
Query: 330 RELEDLYFALLDNNVSLKKTVNEQRETIKILNTKVQRLSTARKNIYGKEQNDCCR--SVK 503
R+ E ++ L +KK + E K TK++++ ++ +GKE+ + C+ S +
Sbjct: 167 RDKELYFYRELARVKKVKKNEDMAVEIFKNQETKIEQIKRKEQDKHGKEEQNLCKILSEE 226
Query: 504 VMVNEXXELIVELKRENTRLCERVRLLNMRLCSAKQF 614
+ L +E E L + + + +A+Q+
Sbjct: 227 EQWAKNERLFLESYEEEINLINEMENIENEIDNAEQY 263
>03_02_0884 +
12160453-12160518,12160598-12160696,12163223-12163357,
12163841-12163891,12164070-12164693,12164779-12164952,
12165047-12165272,12165368-12165459,12165551-12165649,
12165743-12165791,12165878-12165931,12166235-12166290,
12166367-12166438,12166520-12166615,12167069-12167418,
12167508-12167679,12167777-12167875,12167959-12168090,
12168185-12168288,12168369-12168401,12168744-12168930,
12169016-12169024
Length = 992
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Frame = +3
Query: 339 EDLYFALLDNNVSLKKTVNEQRETIKILN-TKVQRLSTARKNIYGKEQNDCCRSVKVMVN 515
+ +Y L+N+ S ++NE +E K+ + K + + K+ D +M N
Sbjct: 600 DKMYMVTLENSTSPNASLNENKENEKVCHIIKDSPDVFIGEKKFSKKCADIGNKTNMMYN 659
Query: 516 EXXELIVELKRENTRLC---ERVRLLNMR 593
+ ++++ +++N + ERV L NM+
Sbjct: 660 KMNRILLDSQKQNFKTFASPERVLLCNMK 688
>12_01_0672 + 5731288-5731356,5732032-5732117,5732634-5732724,
5732886-5732935,5733339-5733408,5733508-5733617,
5733943-5734463,5734856-5734949,5735095-5735225,
5735241-5736274,5736383-5736457,5736615-5737104,
5737375-5738009,5738166-5738378
Length = 1222
Score = 29.5 bits (63), Expect = 2.3
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Frame = +3
Query: 267 KTHTSRSERELYRTCPTKLSKRELEDLYFALLDNNVSLKKTVNEQRETIKILNTK---VQ 437
K S + +LYR L K L + D +++ VN +++ + ++K V
Sbjct: 770 KVPLSVRQAQLYRIVEHYLQKANLSVIR-RCADTELAIADAVNVEKDISERSSSKSVYVN 828
Query: 438 RLSTA-RKNIYGKEQNDCCRSVKVMVNEXXELIVELKRENTRLC 566
S A R+ GK +ND ++ +E L +++ ENT +C
Sbjct: 829 LCSQATRQPAKGKSENDASDLIEKSESENGPLPQQVQTENTDIC 872
>08_02_0747 -
20728073-20728081,20728167-20728353,20728810-20728913,
20729008-20729139,20729583-20729810,20730263-20730358,
20730440-20730511,20730588-20730760,20730947-20731000,
20731086-20731134,20731228-20731326,20731420-20731511,
20731607-20731832,20731927-20732100,20732186-20732809,
20732890-20733033,20733108-20733218,20733516-20733650,
20733963-20733989
Length = 911
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Frame = +3
Query: 339 EDLYFALLDNNVSLKKTVNEQRETIK---ILNTKVQRLSTARKNIYGKEQNDCCRSVKVM 509
+ +Y L+N+ S ++NE +E K I+ + K + K+ D +M
Sbjct: 661 DKMYMVTLENSTSPNASLNENKENEKGCHIIKDSPDVVFIGEKK-FSKKCADIGNKTNMM 719
Query: 510 VNEXXELIVELKRENTRLC---ERVRLLNMR 593
N+ ++++ +++N + ERV L NM+
Sbjct: 720 YNKMNRIMLDSQKQNFKTFASPERVLLCNMK 750
>04_04_1390 -
33184233-33184478,33184601-33184705,33184783-33184890,
33184967-33185101,33185263-33185363,33185495-33185564,
33185642-33185758,33186001-33186138,33186371-33186439,
33186556-33186645,33186758-33186940,33187020-33187052
Length = 464
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +3
Query: 300 YRTCPTKLSKRELEDLYFALLDNNVSLKKTVNE 398
YRT T LSK++L+ + +L+D SLKK +++
Sbjct: 187 YRTSITGLSKKDLKGVTCSLVDVQKSLKKLLSK 219
>10_08_0768 - 20445601-20445615,20445883-20445967,20447441-20447655
Length = 104
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -3
Query: 366 CREGQSKDLPTLAYLTLSGMFCRVLSQISKCEFYKRYLVHFALYYYN 226
CR+ Q LP + Y F VL+ KC+ +RY+V Y N
Sbjct: 59 CRQ-QLDRLPQILYCFSLTTFINVLNPSPKCQLVQRYVVLSEKLYSN 104
>10_05_0085 -
9005539-9005922,9006207-9006463,9006707-9006883,
9007349-9007490,9007814-9007904,9009024-9010942
Length = 989
Score = 27.5 bits (58), Expect = 9.4
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Frame = +3
Query: 315 TKLSKRELEDLYFALLDNNVSLKKTVNEQRETIKILNTKVQRLSTARKNIYGKEQNDCCR 494
TK+ +EL ++ L +KK + E K TK++++ K+ Y KE+ + +
Sbjct: 205 TKIRDKEL--YFYKELARVKKVKKNEDMAVEIFKNQETKIEQIKRKEKDKYCKEEQNLGK 262
Query: 495 --SVKVMVNEXXELIVELKRENTRLCERVRLLNMRLCSAKQF 614
S + E L +E E L + + + +A+Q+
Sbjct: 263 ILSEEEQWAENERLFLESYEEEINLINEMENIENEIDNAEQY 304
>06_03_0749 +
24133302-24134274,24134585-24135272,24135751-24135857,
24137565-24137815
Length = 672
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 303 RTCPTKLSKRELEDLYFALLDNNVSLKKTVNEQ 401
+T + SKR+L+DL +NN ++ KTV+E+
Sbjct: 312 KTSGSPPSKRKLKDLVDTKKENNQAVSKTVDEK 344
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,131,254
Number of Sequences: 37544
Number of extensions: 245972
Number of successful extensions: 560
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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