Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_H04
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.004
SB_18590| Best HMM Match : FYVE (HMM E-Value=8.8e-29)                  34   0.084
SB_7846| Best HMM Match : CoCoA (HMM E-Value=0.00016)                  32   0.34 
SB_39891| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.11)             31   0.78 
SB_41374| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_44426| Best HMM Match : Lectin_legB (HMM E-Value=4.8)               29   3.2  
SB_48647| Best HMM Match : Pencillinase_R (HMM E-Value=0.17)           28   7.3  
SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_42677| Best HMM Match : TUDOR (HMM E-Value=0)                       27   9.7  
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     27   9.7  
SB_50834| Best HMM Match : GCR (HMM E-Value=2.5)                       27   9.7  
SB_40459| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)    27   9.7  
SB_20161| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2193

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
 Frame = +3

Query: 321 LSKR--ELEDLYFALLDNNVSLKKTVNEQRETIKILNTKVQRLSTARKNIYGKEQNDCCR 494
           L KR  ELE +   L D   +L++ VN     I  L TKV+ L    K  Y KE  +   
Sbjct: 271 LKKRITELELIINTLKDEKEALEQDVNSMSYKISNLETKVKNLE-KEKAFYQKESEELEA 329

Query: 495 SVKVMVNEXXELIVELKRENTRLCERVRLLNMRLCSAKQFTKR 623
             + M NE  +L  +LK +  R+CE +     +L ++    KR
Sbjct: 330 KNRRMKNEILQLQNQLK-DKERMCENLAAEAKQLEASNNALKR 371


>SB_18590| Best HMM Match : FYVE (HMM E-Value=8.8e-29)
          Length = 551

 Score = 34.3 bits (75), Expect = 0.084
 Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 3/109 (2%)
 Frame = +3

Query: 282 RSER-ELYRTCPTKLSK-RELEDLYFALLDNNVSLKKTVNEQRETIKILNTKVQRLST-A 452
           + ER EL  T      K  E ++LY   L++   L+  +NE    I  L   +Q L T A
Sbjct: 6   KQERSELMTTLKNVKEKLEESKNLYAKKLESEKELQDKINELNTEISSLQEGMQELGTIA 65

Query: 453 RKNIYGKEQNDCCRSVKVMVNEXXELIVELKRENTRLCERVRLLNMRLC 599
            K I   E   C    +  + +    +  L+ E  + CE  +    +LC
Sbjct: 66  EKEISLDEMQKCLEEKEDKLTQLQRRVEVLEAELKKECESCKNYESQLC 114


>SB_7846| Best HMM Match : CoCoA (HMM E-Value=0.00016)
          Length = 1284

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 23/81 (28%), Positives = 33/81 (40%)
 Frame = +3

Query: 336 LEDLYFALLDNNVSLKKTVNEQRETIKILNTKVQRLSTARKNIYGKEQNDCCRSVKVMVN 515
           LED     L+ N SLK +  +   TIK LN  +  L   RK     + N   +  +    
Sbjct: 519 LEDSLSRALEENTSLKTSKEQYESTIKELNDSIMELEN-RKATLTSKLNSITKDCEESKK 577

Query: 516 EXXELIVELKRENTRLCERVR 578
           E   L + L+ +   L E  R
Sbjct: 578 ESRALSICLEEKTRNLHEEKR 598


>SB_39891| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.11)
          Length = 285

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = +3

Query: 327 KRELEDLYFALLDNNVSLKKTVNEQRETIKILNTKVQRLSTARKNIYGK--EQNDCCRSV 500
           +R+   L     D ++ L K VNE ++ ++   TKV   +     + GK  E N     V
Sbjct: 178 ERDYVTLLKEWFDRDLDLSKEVNETKKEVQETKTKVDEANKEVHEVKGKVDETNKEVHEV 237

Query: 501 KVMVNEXXELIVELK 545
           K  V+E  + + E+K
Sbjct: 238 KGKVDETNKEVHEVK 252


>SB_41374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1039

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 312 PTKLSKRELEDLYFALLDNNVSLKKTVNEQRETIKILNTKV 434
           P  LS+  L ++ FA +D  V+L KT    +ET  I+N  V
Sbjct: 179 PRALSEALLFEITFAAVDQQVNLHKTFVISKETDSIINESV 219


>SB_44426| Best HMM Match : Lectin_legB (HMM E-Value=4.8)
          Length = 439

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/68 (26%), Positives = 32/68 (47%)
 Frame = +3

Query: 222 MNCNNTEQNGRDIVCKTHTSRSERELYRTCPTKLSKRELEDLYFALLDNNVSLKKTVNEQ 401
           +NCN+ + + R  +  +H S  ++++   C +KLS  +     F   D NV  K+     
Sbjct: 128 INCNSIKSSERAAMFASHVSAHKQDIIFGCESKLSPEDTTSASFQ-SDYNVFRKERSGSD 186

Query: 402 RETIKILN 425
           R    IL+
Sbjct: 187 RTGKVILH 194


>SB_48647| Best HMM Match : Pencillinase_R (HMM E-Value=0.17)
          Length = 1084

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +3

Query: 357 LLDNNVSLKKTVNEQRETIKILNTKVQRLSTARKNIYGKEQNDCCRSVKV 506
           L    V+  +  NE RE  ++++ K QR+   + +I G +QN+  +S  +
Sbjct: 142 LAAEKVTSSRLHNELREAKQVISEKEQRIMELKCDIEGGKQNEARQSALI 191


>SB_21496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1787

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +3

Query: 381  KKTVNEQRETIKILNTKVQRLSTARKNIYGK--EQNDCCRSVKVMVNEXXELIVE 539
            KK + ++ + IKIL  KVQ L  AR    G   +    C++++  V+E  E + +
Sbjct: 1394 KKEIIDKDKKIKILQEKVQLLDKARGYSSGTIGDLERKCQALQAQVHEMEEFLAD 1448


>SB_42677| Best HMM Match : TUDOR (HMM E-Value=0)
          Length = 1150

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +1

Query: 235 IQSKMDEISFVKLTLRDLRENSTEHARQS*VSESWKIFTLPFSTIT 372
           ++S  ++  +++  L D  EN+T+ AR   V    K F   +ST++
Sbjct: 19  LESIKEQSDYIRQVLNDTVENATKPARDLLVQRDRKKFFAKYSTVS 64


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 26/95 (27%), Positives = 40/95 (42%)
 Frame = +3

Query: 333  ELEDLYFALLDNNVSLKKTVNEQRETIKILNTKVQRLSTARKNIYGKEQNDCCRSVKVMV 512
            +L+D +  L + N  LK+  NEQ E +          S     +  KE N+   S+   +
Sbjct: 1847 QLQDAHEKLSEENRLLKRKENEQSENVDDFE------SGEELQLKIKELNEKNESLSSQL 1900

Query: 513  NEXXELIVELKRENTRLCERVRLLNMRLCSAKQFT 617
             E      +LK EN  L +R+  L  +  S  Q T
Sbjct: 1901 REAISANSQLKEENGILEQRIASLE-KEASRSQMT 1934


>SB_50834| Best HMM Match : GCR (HMM E-Value=2.5)
          Length = 909

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = +3

Query: 228 CNNTEQNGRDIVCKTHTSRSERELYRTCPTKLSKRELEDLYFALLDNNVSLKKTVNEQRE 407
           C +T     D     HTS+ +  +    P KLSK +L  L  +L +  +S  +T + +  
Sbjct: 175 CPSTTSRLTDNSLDAHTSK-DSNITEHAPVKLSKNQLRKLDSSLRNRLLSYLQTNSGEHA 233

Query: 408 TIKILNTK 431
              I+N K
Sbjct: 234 LRDIVNQK 241


>SB_40459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +3

Query: 222 MNCNNTEQNGRDIVCKTHTSRSERELYRTCPTKLSKRELEDLYFAL 359
           +NCN+ + + R  +  +H S  + ++   C +KLS  +     F L
Sbjct: 3   INCNSIKSSKRAAIFASHVSAHKPDVIFGCESKLSPEDTTSARFPL 48


>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
          Length = 4160

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +3

Query: 375  SLKKTVNEQRETIKILNTKVQRLSTARKNIYGKE 476
            SLKKTV+++ E I+ LN +++ L    + +  KE
Sbjct: 1878 SLKKTVSKKTEVIEDLNRQIKYLEDELEKVRKKE 1911


>SB_20161| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 475

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
 Frame = +3

Query: 291 RELYRTCPTKLSKRELEDLYF-ALLDNNVSLKKTVNEQ---RET-IKILNTKVQRLSTAR 455
           +E +RTC  ++SKR+   L   A LD      ++V  +   RE  I  L T + RL +  
Sbjct: 73  KEKHRTCALEVSKRDETVLSLQAELDATQQEYESVTSELRGRENEIAELKTSIGRLESEL 132

Query: 456 KNIYGKEQNDCCRSVKVMVNEXXELIVELKRENTRLCERVR 578
           +++  + QN    S K  ++E    I +LK +  R  + +R
Sbjct: 133 RSLKSELQNS---SEK--ISEDEHEISQLKNDKARCMQELR 168


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,571,232
Number of Sequences: 59808
Number of extensions: 321081
Number of successful extensions: 753
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)