Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_H04
(635 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81595-2|CAB04749.1| 527|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z81502-5|CAB04108.2| 672|Caenorhabditis elegans Hypothetical pr... 29 3.7
U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical pr... 28 6.4
AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical... 28 6.4
AF036705-8|AAB95169.1| 685|Caenorhabditis elegans Hypothetical ... 28 6.4
AC024751-13|AAK21512.2| 488|Caenorhabditis elegans Hypothetical... 28 6.4
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 27 8.5
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 27 8.5
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 27 8.5
>Z81595-2|CAB04749.1| 527|Caenorhabditis elegans Hypothetical
protein T22H2.2 protein.
Length = 527
Score = 28.7 bits (61), Expect = 3.7
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Frame = -3
Query: 300 RVLSQISKCEFYKRYLVHFALYYYNSSFKRKIILRSNKI*IILVKLFAVIL--L*MTQSD 127
RVL+ I Y YL+H+ +Y Y K+ NK+ ++ L ++ L L +
Sbjct: 269 RVLTYIGDIS-YSLYLIHWPIYSY-----WKLTYEGNKLLLVAALLCSIFLAVLVFETVE 322
Query: 126 KWIMGLDKALVGYLTVF*ILHRII*VRLKQY 34
KW + L + L V I+ V Q+
Sbjct: 323 KWYLKLTSTKLARLVVLLFALNIVLVERDQF 353
>Z81502-5|CAB04108.2| 672|Caenorhabditis elegans Hypothetical
protein F14B6.5 protein.
Length = 672
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/89 (22%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Frame = -3
Query: 267 YKRYLVHFALY-YYNSSFKRKIILRSNKI*IILVKLFAVILL*MTQSDKWIMGLDKALVG 91
Y YL+H+ +Y Y+ +F + N + + L+ + ++ +KW + L +G
Sbjct: 309 YSLYLIHWPIYAYWKLAFDGDV----NLLILSLLSSIILAIIVFEFFEKWYLKLSSTSIG 364
Query: 90 YLTVF*ILHRII*VRLKQYI----DSNSH 16
L VF +I + + I ++N+H
Sbjct: 365 LLIVFLFFLNVILINKDELIPDREENNNH 393
>U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical protein
F46H5.4 protein.
Length = 2018
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 462 IYGKEQNDCCRSVKVMVNEXXELIVELKRENTRLCERVRLLNMR 593
I+ +QN + +++ + EL EL ++ R C RL N+R
Sbjct: 1392 IFAAQQNFLAKFPDMILEQNPELCAELSQQILRHCSSTRLENVR 1435
>AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical
protein Y39B6A.30 protein.
Length = 1408
Score = 27.9 bits (59), Expect = 6.4
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +3
Query: 384 KTVNEQRETIKILNTKVQRLSTARKNIYGKEQNDCCRSVKVMVNEXXELI-VELKRENTR 560
K V E +E I ILN KVQ +++++ R K M NE +L+ VE ++E +
Sbjct: 1006 KKVKEGQEKIAILNAKVQE---------KEDKSEARRKQKEMDNEAEKLLNVEKEKEKRK 1056
Query: 561 LCER 572
+ E+
Sbjct: 1057 IIEK 1060
>AF036705-8|AAB95169.1| 685|Caenorhabditis elegans Hypothetical
protein F37C4.3 protein.
Length = 685
Score = 27.9 bits (59), Expect = 6.4
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Frame = -3
Query: 300 RVLSQISKCEFYKRYLVHFALYYYNSSFKRKIILRSNKI*IILVKLFAVILL*MTQS--D 127
R+L+ I Y YL+H+ +Y Y K+ N+I + + +VIL +T +
Sbjct: 310 RILAYIGDIS-YSLYLIHWPIYAY-----WKLTCNGNQILLAVALASSVILAVITYETFE 363
Query: 126 KWIMGLDKALVGYLTVF*ILHRII*VRLKQYIDSN 22
K + L VG L V + ++ ++ D N
Sbjct: 364 KCYLKLSSTNVGLLVVLLFILNVVVIQKDDISDHN 398
>AC024751-13|AAK21512.2| 488|Caenorhabditis elegans Hypothetical
protein Y18H1A.9 protein.
Length = 488
Score = 27.9 bits (59), Expect = 6.4
Identities = 25/100 (25%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Frame = +3
Query: 297 LYRTCPTKLSKRE-LEDLYFALLDNNVSLKKTVNEQRETIKILNTKVQRLSTARKNIYGK 473
++R PT + + L +LY L D + K+ +E + + ++ +S + + K
Sbjct: 23 VWRVQPTTQDQVDILHNLY--LNDVKLDFWKSPSEAGKEVHVM------ISDEKTQQFMK 74
Query: 474 EQNDCCRSVKVMVNEXXELIVELKRENTRLCERVRLLNMR 593
E +D VM+++ ++IVE K + +L ++VRL + R
Sbjct: 75 ELDDHSIKHSVMIDDVQKVIVEQKEKRDKLRKQVRLHDWR 114
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 357 LLDNNVSLKKTVNEQRETIKILNTKVQRLSTARKNIYGKE 476
+L+ + L V +ETI+ L ++++L K + GKE
Sbjct: 877 ILNQKLKLDGDVQALKETIRKLENELEKLRNENKELVGKE 916
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 357 LLDNNVSLKKTVNEQRETIKILNTKVQRLSTARKNIYGKE 476
+L+ + L V +ETI+ L ++++L K + GKE
Sbjct: 950 ILNQKLKLDGDVQALKETIRKLENELEKLRNENKELVGKE 989
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +3
Query: 357 LLDNNVSLKKTVNEQRETIKILNTKVQRLSTARKNIYGKE 476
+L+ + L V +ETI+ L ++++L K + GKE
Sbjct: 950 ILNQKLKLDGDVQALKETIRKLENELEKLRNENKELVGKE 989
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,478,728
Number of Sequences: 27780
Number of extensions: 263587
Number of successful extensions: 695
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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