Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_H03
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    28   1.3  
SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual       27   2.3  
SPBC21B10.11 |dpm2||dolichol-phosphate mannosyltransferase subun...    27   3.1  
SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr 1|||M...    26   4.1  
SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit Cdc1|S...    26   5.4  
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    26   5.4  
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    25   7.2  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.5  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    25   9.5  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      25   9.5  
SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.5  

>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 257 NKVDQNIKKLLVLSEPAADPNIVEKIIQRAKKQKPLLENTEV 382
           NK+D  + ++L    P   PN + +I+Q +K    L EN  +
Sbjct: 116 NKLDLTLVQILKQEWPHNWPNFIPEIVQASKTNLSLCENNMI 157


>SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 296

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 546 ATLFILTTLWINTYPFLDEDSAVYELIPNPKWF 644
           AT++ +    INTYP ++E   VY  +PN  +F
Sbjct: 231 ATMYKMADTIINTYPAINE---VYYALPNKHYF 260


>SPBC21B10.11 |dpm2||dolichol-phosphate mannosyltransferase subunit
           2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 72

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 531 ILISTATLFILTTLWINTYPFLDEDSAVYELIPNPKW 641
           + ISTA  F+  T+W+   PF+D  +   +L  + +W
Sbjct: 3   VYISTAA-FLYYTIWVLIMPFVDNMNISQKLFLDREW 38


>SPAC4G8.10 |gos1||SNARE Gos1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
 Frame = +2

Query: 278 KKLLVLSEPAADPN------IVEKIIQRAKKQKPLLENTEVKKGKEKSILFPEEKQSFQD 439
           +KLL  +  +AD N       ++   +R K+ + LL     K   ++ +L PEE +  Q+
Sbjct: 35  RKLLEEANSSADENDSHSMATIKSHFERLKRDEQLLNGVLKKYDAKQEVLSPEELRDAQN 94

Query: 440 F 442
           F
Sbjct: 95  F 95


>SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit
           Cdc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 22/78 (28%), Positives = 34/78 (43%)
 Frame = +3

Query: 399 NPSFSLKKNNHFKTLKKNCFVXELHNYIKKYMYMDIPDAVVGKFILISTATLFILTTLWI 578
           NP++ L   NHF        + +L  Y  K   +   +      +L +  T     TLW 
Sbjct: 328 NPTW-LSLGNHFVLATSGQNINDLRKYHPKKSSLQCMENT----LLWNHITPTSPDTLWC 382

Query: 579 NTYPFLDEDSAVYELIPN 632
             YPF D+D+ V E +P+
Sbjct: 383 --YPFTDKDTFVMEEMPD 398


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 266 DQNIKKLLVLSEPAADPNIVEKIIQRAKKQKPLL 367
           D N+K+     E ++  N+ E +++R KK  P+L
Sbjct: 385 DHNVKRYGKSEESSSTMNVGEGLLKRTKKYIPIL 418


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/36 (27%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +3

Query: 162 KSVVRNVRGLQVKQFLIHTKVEVKKRT--TQLMIIK 263
           K +VRN   + ++ ++ H K+++ K T  +++ I+K
Sbjct: 286 KLIVRNEESIDIRSYVFHKKIQLIKVTISSEMNILK 321


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 338 QRAKKQKPLLENTEVKKGKEKSILFPEEKQSFQDFE 445
           Q+  + K ++E ++V    +K  L PE   +FQ F+
Sbjct: 625 QQVSEAKDIVEPSDVLDELQKFDLLPENDDNFQTFQ 660


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -3

Query: 248  LCCSFFHFYFCMDEELLDLQTSNVSYHAFL-VCCVLLGRQIPTPV*LKLKTYFKMIQLIK 72
            +C +    YF +  +LL     +++YH  L V C+  G  +P      L TYF+ ++   
Sbjct: 1005 VCDNAVSQYFLVTPKLLP----DLTYHRNLKVLCICNGAWLPATFRTSLSTYFEKLKKSA 1060

Query: 71   MI 66
            +I
Sbjct: 1061 LI 1062


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +3

Query: 384  KKVKKNPSFSLKKNNHFKTLKKNCFVXELHNYIKKYMYMDIPDAVVGKFILISTA 548
            +K  + P F   K    K   +   V   H   K+ +Y+ I    VGKFIL +T+
Sbjct: 1383 RKSGRVPRFGSFKYPALKLYDRGVLVSISHMPQKEKLYITISADEVGKFILEATS 1437


>SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 210

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
 Frame = +3

Query: 432 FKTLKKNCFVXELHNYIKKYMYMDIPDAVVGKFILISTATLFI-LTTLWI---NTY 587
           F  + K  +V E H+Y+ K     + D+  G  + +   TLF  +  LW+   NTY
Sbjct: 121 FIDIIKALYVNEKHHYLPKQAIDVVIDSYNGGCVNLPPETLFYDMQRLWLTAMNTY 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,511,925
Number of Sequences: 5004
Number of extensions: 48803
Number of successful extensions: 137
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)