Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_H03
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0127 - 926333-926359,926637-926708,926928-927032,927129-92...    33   0.15 
09_06_0214 + 21616019-21616086,21616205-21616252,21616336-216164...    30   1.8  
04_04_0919 - 29422003-29422267,29422411-29422660,29423163-294234...    30   1.8  
02_05_0419 - 28814754-28816114,28816749-28817435,28817554-288177...    29   2.4  
05_07_0247 + 28643862-28644310,28645151-28645207,28645644-286489...    29   3.2  
06_03_0785 - 24563310-24565004,24565302-24565384,24565484-245660...    27   9.8  

>02_01_0127 -
           926333-926359,926637-926708,926928-927032,927129-927227,
           927298-927381,927462-927518,927596-927671,927755-927807,
           927899-927931,928100-928165,928556-928628,928721-928794,
           929177-929237,929354-929536,929656-929703,929810-929868
          Length = 389

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +3

Query: 504 IPDAVVGKFILISTATLFILTTLWINTYP---FLDEDSAVYELIPNPK 638
           +PDA V +F  I    +F    LW+N       ++ D+   E+IPNPK
Sbjct: 195 VPDAHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPK 242


>09_06_0214 +
           21616019-21616086,21616205-21616252,21616336-21616427,
           21616555-21616645,21617660-21617720,21617810-21617887,
           21617979-21618029,21618118-21618191,21618306-21618378,
           21618762-21618819,21618899-21618969,21619045-21619110,
           21619327-21619359,21619445-21619497,21619572-21619647,
           21619729-21619785,21619874-21619957,21620037-21620135,
           21620260-21620364,21620575-21620643,21621019-21621108
          Length = 498

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +3

Query: 504 IPDAVVGKFILISTATLFILTTLWINTYP---FLDEDSAVYELIPNPK 638
           +PD  V +F  I    +F    LW+N       ++ ++   E+IPNPK
Sbjct: 284 VPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEAEALKMEIIPNPK 331


>04_04_0919 -
           29422003-29422267,29422411-29422660,29423163-29423481,
           29423625-29424794,29424879-29425388,29425449-29425607
          Length = 890

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -2

Query: 393 LPFFTSVFSSKGFCFLALCIIFSTILGSA 307
           LP  TS F  K FC  +  +IF T+ GSA
Sbjct: 534 LPATTSPFKIKKFCLRSASLIFCTVSGSA 562


>02_05_0419 -
           28814754-28816114,28816749-28817435,28817554-28817774,
           28818536-28818750
          Length = 827

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/34 (32%), Positives = 24/34 (70%)
 Frame = +2

Query: 338 QRAKKQKPLLENTEVKKGKEKSILFPEEKQSFQD 439
           +++KK+K +  ++++KK  E+ +L    K++FQD
Sbjct: 162 KKSKKRKGITASSDIKKEAEQYVLHAGSKRNFQD 195


>05_07_0247 + 28643862-28644310,28645151-28645207,28645644-28648950,
            28649069-28649144,28649356-28649426,28649524-28649589,
            28649677-28649766,28649874-28650050,28650513-28650548
          Length = 1442

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 335  IQRAKKQKPLLENTEVKKGKEKSILFPEEKQSFQDFEKE 451
            +QR K+Q  L    E +K KE S    E K+  + FEKE
Sbjct: 1097 VQRLKEQGSLRTEREREKDKEASRRLEETKERDKKFEKE 1135


>06_03_0785 - 24563310-24565004,24565302-24565384,24565484-24566039,
            24566397-24566513,24566565-24567131,24568632-24568702,
            24569833-24569903,24570270-24570441,24571229-24572212,
            24573128-24574808
          Length = 1998

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +3

Query: 456  FVXELHNYIKKYMYMDIPDAVVGKFILISTATLFILTTLWINTYPFL 596
            FV +L  Y+      DIP         +   T+F L + W NTYP +
Sbjct: 1700 FVEKLKIYVDHLR--DIPKVAFNNMKQLKELTIFGLGSSWENTYPII 1744


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,447,443
Number of Sequences: 37544
Number of extensions: 253130
Number of successful extensions: 580
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)