Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_H02
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.12 |||NGG1p interacting factor 3 family|Schizosaccharomy...   101   7e-23
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    27   2.4  
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch...    26   4.1  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   4.1  
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p...    26   5.5  
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23...    25   7.2  
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    25   9.5  

>SPCC126.12 |||NGG1p interacting factor 3 family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score =  101 bits (243), Expect = 7e-23
 Identities = 67/169 (39%), Positives = 93/169 (55%), Gaps = 9/169 (5%)
 Frame = +2

Query: 173 VLEKFAPKELAESWDNTGLLVEPYTPR-QITKILLTNDLTEDVALEA-EILACEMIISYH 346
           V+E     +LA+SWDNTGLL+E   PR   + +LLT DLTE VA EA        I++YH
Sbjct: 13  VVESIYNPKLADSWDNTGLLLEAPFPRTNASSVLLTIDLTEKVAEEAISNKLVSSIVAYH 72

Query: 347 PPIFAPLKSIVQRSWKERVVSYLLXKRIALYSPHTSWDSVQGGVNDWLASAFSVAES--K 520
           P IF  LK+I     ++R +  L  + I +YSPHT+ D+   GVNDWLA   +   +  K
Sbjct: 73  PIIFRGLKAITMEDPQQRSLLKLAAEGIHVYSPHTAVDAAVDGVNDWLAQGIAGGRNNIK 132

Query: 521 PIL--QSNN---PDFGAGRLLHLSTGIPLSDAVNRIXELTRLSHVRIAA 652
            ++  Q N+      G GR+  L     L + V R  ELT L +V++ A
Sbjct: 133 SVVPTQQNSVMAEAEGYGRICELKIPTTLRELVQRAKELTGLQYVQVCA 181


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = -2

Query: 333  IISHARISASKATSSVKSLVNKILVICLGV*GSTNKPVLSQLSANSFGANFSSTVTTL-- 160
            ++ +   S     SS   L  KI+ + +GV    +  +   +   +F   FSS ++ L  
Sbjct: 1666 VVKYTEGSTEGTVSSKSVLFRKIIALIIGVFAELHNSMAEFVHQKTFFRLFSSILSELDD 1725

Query: 159  SKDTAQNFSVDI 124
            +KD  ++  VDI
Sbjct: 1726 AKDVLESCFVDI 1737


>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 89  NSRNHLFTHFIKMSTEKFCAVSLERVVTVLEKFAPKELAESWD 217
           NS      H  K  T+K    ++E ++    KFAP + A + D
Sbjct: 335 NSEPRFLIHDTKAETDKDFDSAVEAIIAAAAKFAPGDPASASD 377


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
 Frame = -1

Query: 265 FGYLSRCVRFH-------QQTSVIPTLCQFFWSKFFKYCYYSF 158
           F + S C RFH         ++V+P  C FF+   F +  + F
Sbjct: 82  FFFFSHCRRFHIAIFIHPYDSNVVPFFCFFFYFSLFSFFSFLF 124


>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 352

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -1

Query: 250 RCVRFHQQTSVIPTLCQFFWSKFFKY 173
           RCVRF +     P L    W K  KY
Sbjct: 119 RCVRFVEAMGTSPILATGSWDKTLKY 144


>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
           Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +2

Query: 371 SIVQRSWKERVVSYLLXKRIALYSPHTSWDSVQGGVNDWLASAFSVAESK 520
           ++    W++  V++L    IAL  P TS +     + D   SA  +  +K
Sbjct: 36  NLPSNKWQDIPVTFLHDNEIALIDPETSMEEASSILIDRDLSALPIVAAK 85


>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +2

Query: 119 IKMSTEKFCAVSLERVVTVLEKFAPKE 199
           + + ++ +C+ S+  V+T+L K  P+E
Sbjct: 84  VALMSDGYCSNSIGTVITILRKLYPEE 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,733,128
Number of Sequences: 5004
Number of extensions: 55825
Number of successful extensions: 153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)