Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_H02
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29942| Best HMM Match : NIF3 (HMM E-Value=9.7e-16)                 143   1e-34
SB_44115| Best HMM Match : NIF3 (HMM E-Value=8.7e-06)                  37   0.016
SB_48953| Best HMM Match : NIF3 (HMM E-Value=1.7e-12)                  33   0.15 
SB_21800| Best HMM Match : XPG_I (HMM E-Value=1.7e-36)                 29   3.3  
SB_8817| Best HMM Match : I-set (HMM E-Value=0)                        29   3.3  
SB_5817| Best HMM Match : DpmII (HMM E-Value=1.5)                      28   5.8  
SB_35327| Best HMM Match : Cellulase (HMM E-Value=4e-05)               28   7.6  

>SB_29942| Best HMM Match : NIF3 (HMM E-Value=9.7e-16)
          Length = 200

 Score =  143 bits (346), Expect = 1e-34
 Identities = 69/129 (53%), Positives = 85/129 (65%)
 Frame = +2

Query: 149 VSLERVVTVLEKFAPKELAESWDNTGLLVEPYTPRQITKILLTNDLTEDVALEAEILACE 328
           + L+ VV+ LE +AP  LAE WDN GLLVEP     +  ILLTNDLTE V  EA      
Sbjct: 27  MDLKEVVSNLESWAPTSLAEKWDNVGLLVEPSGQHNVRSILLTNDLTEKVLQEAIEKRAN 86

Query: 329 MIISYHPPIFAPLKSIVQRSWKERVVSYLLXKRIALYSPHTSWDSVQGGVNDWLASAFSV 508
           MIISYHPPIF PLK +  +S+KER++   + +RIA+YSPHT++D+V GGVNDWLA     
Sbjct: 87  MIISYHPPIFVPLKRLTSKSFKERIIVKAIEERIAIYSPHTAFDAVFGGVNDWLAKGLGR 146

Query: 509 AESKPILQS 535
               PI  S
Sbjct: 147 GSVDPITYS 155


>SB_44115| Best HMM Match : NIF3 (HMM E-Value=8.7e-06)
          Length = 154

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 17/38 (44%), Positives = 25/38 (65%)
 Frame = +2

Query: 542 PDFGAGRLLHLSTGIPLSDAVNRIXELTRLSHVRIAAA 655
           P  G+GRL  L T + L D ++RI +  +LSH+R+A A
Sbjct: 45  PGTGSGRLCTLDTPVTLPDIIHRIKKHLQLSHLRVAYA 82


>SB_48953| Best HMM Match : NIF3 (HMM E-Value=1.7e-12)
          Length = 288

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = +2

Query: 383 RSWKERVVSYLLXKRIALYSPHTSWDSVQGGVNDWLASAFSVAESKPILQSNN 541
           +++ ER +   +   IA+Y+ HT+ D+ Q GVN    +A  +  +K ++   N
Sbjct: 2   KNYVERAILKAIKNDIAIYAIHTALDNHQQGVNKIFCNALGLMNTKILIPKEN 54


>SB_21800| Best HMM Match : XPG_I (HMM E-Value=1.7e-36)
          Length = 942

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -2

Query: 627 RVSSLILFTASDNGIPVLK*SNLPAPKSGLFDCKIGLDSATEKADAN 487
           RV  + +F   D G+PVLK   L A +   F  K G + A EK   N
Sbjct: 35  RVKPVFVF---DGGVPVLKKKTLEARRERRFKAKHGSNKAAEKIIKN 78


>SB_8817| Best HMM Match : I-set (HMM E-Value=0)
          Length = 2526

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -2

Query: 612 ILFTASDNGIPVLK*SNLPAPKSGLFDCKIGLDSAT 505
           ++ +  D+GI VL+  ++ A  SG++ CK+  D  T
Sbjct: 709 VIISEQDDGIVVLRIKDVGAHDSGVYKCKVTSDVGT 744



 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -2

Query: 612 ILFTASDNGIPVLK*SNLPAPKSGLFDCKIGLDSAT 505
           ++ +  D+GI VL+  ++ A  SG++ C++  D  T
Sbjct: 335 VIISEQDDGIVVLRIKDVGAHDSGVYKCQVSSDVGT 370


>SB_5817| Best HMM Match : DpmII (HMM E-Value=1.5)
          Length = 529

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = +2

Query: 206 ESWDNTGLLV--EPYTPRQITKILLTNDLTEDVALEAEILACEMIISYHPPIFAPLKS 373
           E WDN   ++  + +T        +  D T+D+ + A++ A E + S   P F   +S
Sbjct: 128 EIWDNIQAVLSQKKFTTPTSKSFKIVRDATKDILVPAKMAAFESVASQLQPFFTAFQS 185


>SB_35327| Best HMM Match : Cellulase (HMM E-Value=4e-05)
          Length = 353

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = -2

Query: 264 LVICLGV*GSTNKPVL----SQLSANSFGANFSSTVTTLSKDTAQN 139
           L+ICL +   TN P+L      +    F  N+  T   LSK  AQN
Sbjct: 11  LIICLQLSEGTNTPILPSDYQDVIKQGFSTNWFKTSDPLSKYNAQN 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,590,599
Number of Sequences: 59808
Number of extensions: 418400
Number of successful extensions: 891
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)