Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_H02
(655 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81070-2|CAB03007.1| 491|Caenorhabditis elegans Hypothetical pr... 35 0.044
AL117199-3|CAB55043.3| 868|Caenorhabditis elegans Hypothetical ... 31 0.94
Z46242-9|CAA86334.2| 491|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p... 28 6.7
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p... 28 6.7
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr... 28 6.7
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein. 28 6.7
J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch... 28 6.7
AC006603-4|AAF39747.2| 379|Caenorhabditis elegans Hypothetical ... 27 8.8
>Z81070-2|CAB03007.1| 491|Caenorhabditis elegans Hypothetical
protein F26E4.3 protein.
Length = 491
Score = 35.1 bits (77), Expect = 0.044
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = -2
Query: 333 IISHARISASKATSSVKSLVNKILVICLGV*GSTNKPVLSQLSANSFGANF 181
+ H+ ++A K SSV + + V+ GV ST KP+ L ANS+G +
Sbjct: 393 VYQHSDLAAQKGASSVAEGYHSVRVLGWGVDHSTGKPIKYWLCANSWGTQW 443
>AL117199-3|CAB55043.3| 868|Caenorhabditis elegans Hypothetical
protein Y43F11A.5 protein.
Length = 868
Score = 30.7 bits (66), Expect = 0.94
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +2
Query: 101 HLFTHFIKMSTEKFCAVSLERVVTVLEKFAPKELAESWDNTGLLVEPYTPRQITK 265
H THF KM C + RV+ L + E E W + +TPR + K
Sbjct: 170 HCATHFDKMIE---CPMESRRVLAALGRARIAEEKEFWSKNRAIARSFTPRSMAK 221
>Z46242-9|CAA86334.2| 491|Caenorhabditis elegans Hypothetical
protein F35G12.12 protein.
Length = 491
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/67 (23%), Positives = 36/67 (53%)
Frame = +2
Query: 236 EPYTPRQITKILLTNDLTEDVALEAEILACEMIISYHPPIFAPLKSIVQRSWKERVVSYL 415
+ ++ ++ K+++ + T+D+ ++ +I+ E I S HP I + V+ KE +S L
Sbjct: 57 DDFSTSKLVKLIIGDISTKDLLVDHQIILLEFIPSAHPNILRHVVRTVRE--KEGAISLL 114
Query: 416 LXKRIAL 436
+A+
Sbjct: 115 KSSSVAI 121
>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
protein F11C3.3 protein.
Length = 1963
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 283 LNRRCGLGS*NSGV*DDYFISSSDICAFEVY 375
L ++C L G+ DYFI DI FE++
Sbjct: 437 LVKKCNLTLDQKGIDRDYFIGVLDIAGFEIF 467
>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical
protein F11C3.3 protein.
Length = 1963
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 283 LNRRCGLGS*NSGV*DDYFISSSDICAFEVY 375
L ++C L G+ DYFI DI FE++
Sbjct: 437 LVKKCNLTLDQKGIDRDYFIGVLDIAGFEIF 467
>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
protein R06C7.10 protein.
Length = 1938
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 283 LNRRCGLGS*NSGV*DDYFISSSDICAFEVY 375
L ++C L G+ DYFI DI FE++
Sbjct: 437 LVKKCNLTLDQKGIDRDYFIGVLDIAGFEIF 467
>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical
protein R06C7.10 protein.
Length = 1938
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 283 LNRRCGLGS*NSGV*DDYFISSSDICAFEVY 375
L ++C L G+ DYFI DI FE++
Sbjct: 437 LVKKCNLTLDQKGIDRDYFIGVLDIAGFEIF 467
>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
Length = 1938
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 283 LNRRCGLGS*NSGV*DDYFISSSDICAFEVY 375
L ++C L G+ DYFI DI FE++
Sbjct: 437 LVKKCNLTLDQKGIDRDYFIGVLDIAGFEIF 467
>J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain
protein.
Length = 1966
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 283 LNRRCGLGS*NSGV*DDYFISSSDICAFEVY 375
L ++C L G+ DYFI DI FE++
Sbjct: 440 LVKKCNLTLDQKGIDRDYFIGVLDIAGFEIF 470
>AC006603-4|AAF39747.2| 379|Caenorhabditis elegans Hypothetical
protein B0524.2 protein.
Length = 379
Score = 27.5 bits (58), Expect = 8.8
Identities = 19/64 (29%), Positives = 33/64 (51%)
Frame = +2
Query: 158 ERVVTVLEKFAPKELAESWDNTGLLVEPYTPRQITKILLTNDLTEDVALEAEILACEMII 337
+R+ V+EKF P ++A++ D LL T + K N+L + + +++ C M
Sbjct: 211 DRLRKVVEKFLPDDVAKAND---LLFVSVTKLKTWK----NELISNFESKIDLIDCLMAS 263
Query: 338 SYHP 349
YHP
Sbjct: 264 CYHP 267
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,238,543
Number of Sequences: 27780
Number of extensions: 320750
Number of successful extensions: 751
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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