Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_H02
         (655 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20280.1 68418.m02414 sucrose-phosphate synthase, putative si...    33   0.13 
At1g19450.1 68414.m02423 integral membrane protein, putative / s...    32   0.29 
At4g20320.1 68417.m02967 CTP synthase, putative / UTP--ammonia l...    31   0.67 
At1g75220.1 68414.m08738 integral membrane protein, putative str...    29   2.0  
At5g65240.1 68418.m08207 leucine-rich repeat family protein / pr...    29   2.7  
At5g10020.1 68418.m01161 leucine-rich repeat transmembrane prote...    29   3.6  
At5g01330.1 68418.m00045 pyruvate decarboxylase, putative strong...    28   4.7  
At5g01320.1 68418.m00044 pyruvate decarboxylase, putative strong...    28   4.7  
At5g10290.1 68418.m01194 leucine-rich repeat family protein / pr...    28   6.2  
At4g19090.1 68417.m02814 hypothetical protein contains Pfam doma...    28   6.2  
At5g18980.1 68418.m02255 expressed protein                             27   8.2  

>At5g20280.1 68418.m02414 sucrose-phosphate synthase, putative
           similar to sucrose-phosphate synthase (EC 2.4.1.14)
           isoform 1 - Citrus unshiu, EMBL:AB005023
          Length = 1043

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 34/98 (34%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
 Frame = +2

Query: 191 PKELAESWDNTGLLVEPYTPRQITKILLTNDLTEDVALEAEILACEMIISYHPPIFAPLK 370
           P ++    DN GLLV+P+  + I++ LL   L  D  L A+   C             LK
Sbjct: 603 PVDIHRVLDN-GLLVDPHDQQSISEALLK--LVADKHLWAK---CRQ---------NGLK 647

Query: 371 SIVQRSWKERVVSYLLXKRIALYSP-HTSWDSVQGGVN 481
           +I Q SW E   +YL   RI  + P H  W S  GG N
Sbjct: 648 NIHQFSWPEHCKTYL--SRITSFKPRHPQWQSDDGGDN 683


>At1g19450.1 68414.m02423 integral membrane protein, putative /
           sugar transporter family protein similar to GB:U43629
           GI:1209756 integral membrane protein from [Beta
           vulgaris]; contains Pfam profile PF00083: major
           facilitator superfamily protein; contains TIGRfam
           TIGR00879: Sugar transporter
          Length = 488

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 5/126 (3%)
 Frame = +2

Query: 224 GLLVEPYTPRQITKILLTNDLTEDVALEAEILACEMIISYHPPIFAPLKSIVQRSWKERV 403
           GL   P +PR + K+ LT+D   + +L+  +   E  I+        +K  V  S K   
Sbjct: 217 GLFFIPESPRWLAKMGLTDDF--ETSLQV-LRGFETDITVE---VNEIKRSVASSSKRSA 270

Query: 404 VSYLLXKRIALYSP---HTSWDSVQ--GGVNDWLASAFSVAESKPILQSNNPDFGAGRLL 568
           V ++  KR   Y P        ++Q  GG+N  L  + ++ ES  +  SN   FG G + 
Sbjct: 271 VRFVDLKRRRYYFPLMVGIGLLALQQLGGINGVLFYSSTIFESAGVTSSNVATFGVGVVQ 330

Query: 569 HLSTGI 586
            ++TGI
Sbjct: 331 VVATGI 336


>At4g20320.1 68417.m02967 CTP synthase, putative / UTP--ammonia
           ligase, putative similar to SP|P17812 CTP synthase (EC
           6.3.4.2) (UTP--ammonia ligase) {Homo sapiens}; contains
           Pfam profile PF00117: glutamine amidotransferase class-I
          Length = 563

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 39/158 (24%), Positives = 65/158 (41%), Gaps = 2/158 (1%)
 Frame = +2

Query: 119 IKMSTEKFCAVSLERVVTVLEKFAPKELAESWDNTGLLVEPYTPRQITKILLTNDLTEDV 298
           +K    +FC V +E VVT+       +    W    LL E      I ++L    + ++ 
Sbjct: 226 VKAKLSQFCHVPMENVVTLY------DCPNIWHIPLLLKEQKAHEAIFRVLNLEGVAKEP 279

Query: 299 ALEAEILACEMIISYHPPIFAPLKSIVQRSWKERVVSYLLXKRIALYSPHTSWDSVQGGV 478
           ALE   L  +M    H     P++  V   + E + SYL   +  L   H S    +  +
Sbjct: 280 ALEEWSLMAKMTDKLH----VPVRIAVVGKYTELLDSYLSIHKALL---HASVARRKKLI 332

Query: 479 NDWLASAFSVAESKPILQSNNPDF--GAGRLLHLSTGI 586
            DW+    S ++ +   +  NPD    A +LL  + G+
Sbjct: 333 IDWI----SASDLEQGAKKENPDAYKAAWKLLKGADGV 366


>At1g75220.1 68414.m08738 integral membrane protein, putative strong
           similarity to integral membrane protein GI:1209756 from
           [Beta vulgaris]; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 487

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 5/126 (3%)
 Frame = +2

Query: 224 GLLVEPYTPRQITKILLTNDLTEDVALEAEILACEMIISYHPPIFAPLKSIVQRSWKERV 403
           GL   P +PR + K+ +T++   + +L+  +   E  I+        +K  V  S K   
Sbjct: 216 GLFFIPESPRWLAKMGMTDEF--ETSLQV-LRGFETDITVE---VNEIKRSVASSTKRNT 269

Query: 404 VSYLLXKRIALYSPHTSWDSVQ-----GGVNDWLASAFSVAESKPILQSNNPDFGAGRLL 568
           V ++  KR   Y P      +      GG+N  L  + ++ ES  +  SN   FG G + 
Sbjct: 270 VRFVDLKRRRYYFPLMVGIGLLVLQQLGGINGVLFYSSTIFESAGVTSSNAATFGVGAIQ 329

Query: 569 HLSTGI 586
            ++T I
Sbjct: 330 VVATAI 335


>At5g65240.1 68418.m08207 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 617

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -2

Query: 555 APKSGLFDCKIGLDSATEK-ADANQSLTPPCTLSQLVCGEYRAI 427
           A    LF  +  L ++ E+ +D NQ+   PCT SQ++C + + +
Sbjct: 22  AQGDALFALRSSLRASPEQLSDWNQNQVDPCTWSQVICDDKKHV 65


>At5g10020.1 68418.m01161 leucine-rich repeat transmembrane protein
            kinase, putative receptor-like protein kinase ERECTA,
            Arabidopsis thaliana, EMBL:AC004484
          Length = 1048

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 550  EVGVV*L*NWLRLCDRESRCQPVID 476
            + G V L +W+RLCD+E R    ID
Sbjct: 979  QTGAVDLTDWVRLCDQEGRRMDCID 1003


>At5g01330.1 68418.m00045 pyruvate decarboxylase, putative strong
           similarity to pyruvate decarboxylase 1 [Vitis vinifera]
           GI:10732644; contains InterPro entry IPR000399: Pyruvate
           decarboxylase
          Length = 592

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +2

Query: 470 GGVNDWLASAFSVAESKPIL----QSNNPDFGAGRLLHLSTGIP 589
           GG++   A A + +E+ P++      N+ DFG  R+LH + G+P
Sbjct: 103 GGLSVLNAIAGAYSENLPVICIVGGPNSNDFGTNRILHHTIGLP 146


>At5g01320.1 68418.m00044 pyruvate decarboxylase, putative strong
           similarity to pyruvate decarboxylase 1 [Vitis vinifera]
           GI:10732644; contains InterPro entry IPR000399: Pyruvate
           decarboxylase
          Length = 603

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +2

Query: 470 GGVNDWLASAFSVAESKPIL----QSNNPDFGAGRLLHLSTGIP 589
           GG++   A A + +E+ P++      N+ DFG  R+LH + G+P
Sbjct: 114 GGLSVLNAIAGAYSENLPVICIVGGPNSNDFGTNRILHHTIGLP 157


>At5g10290.1 68418.m01194 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 613

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 555 APKSGLFDCKIGLDSATEK-ADANQSLTPPCTLSQLVCGE 439
           A    LF  +I L +   + +D NQ+   PCT SQ++C +
Sbjct: 29  AQGDALFALRISLRALPNQLSDWNQNQVNPCTWSQVICDD 68


>At4g19090.1 68417.m02814 hypothetical protein contains Pfam domain,
           PF04578: Protein of unknown function, DUF594
          Length = 751

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +2

Query: 86  RNSRNHLFTHFIKMSTEKFCAVSLERVVTVLEKFAPKELAESWDNTGLLVEPYTPRQITK 265
           + S  HL T F  + T  F  V +      +EK + K +A    N G  ++P  P Q  K
Sbjct: 23  KESTRHLVTEFFLLVTHAFLPVQVPETEEPIEK-SVKPVALIAKNQGKYLKPDDPPQNKK 81

Query: 266 IL 271
           ++
Sbjct: 82  LV 83


>At5g18980.1 68418.m02255 expressed protein
          Length = 835

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 19/72 (26%), Positives = 32/72 (44%)
 Frame = +2

Query: 29  KHEILLTVLSA*AGTF*TSRNSRNHLFTHFIKMSTEKFCAVSLERVVTVLEKFAPKELAE 208
           +H+   TV      +F   R+S   LF +  ++S   F   S E   T  +   P+   E
Sbjct: 140 QHQATWTVAGVGISSFRALRSSSASLFKNLKRISDSIFKPRSRE--ATARDCVVPETTLE 197

Query: 209 SWDNTGLLVEPY 244
           +W N+ + + PY
Sbjct: 198 TWKNSDVPLLPY 209


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,209,176
Number of Sequences: 28952
Number of extensions: 290216
Number of successful extensions: 682
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)