Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_G23
         (479 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    23   1.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   1.9  

>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 171 PFRWCISRKGHRPRES 218
           PF+W   +K  R RES
Sbjct: 323 PFKWLFKKKKRRNRES 338


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +2

Query: 380 GHAVGDIPGVR 412
           G AVGD+PG+R
Sbjct: 62  GTAVGDVPGLR 72



 Score = 21.4 bits (43), Expect = 4.5
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = -3

Query: 429  TFTTLKRTPGMSPTA*PLRPNPAXSTSSFXSMWFRQPSXGDECGHFL 289
            T  T +  PG  PT+  +  N   S   +     R+   GD  G+++
Sbjct: 987  TIITAEEVPGGPPTSIRVETNDQHSLVVYWKPPAREEWNGDILGYYV 1033


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,146
Number of Sequences: 336
Number of extensions: 2379
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11247091
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)