Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_G23
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   141   4e-35
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   141   4e-35
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    36   0.003
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    25   4.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   4.5  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    25   7.8  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    25   7.8  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  141 bits (342), Expect = 4e-35
 Identities = 64/85 (75%), Positives = 74/85 (87%)
 Frame = +1

Query: 55  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVXAK 234
           MGKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GV AK
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60

Query: 235 QPNSAIRKCVRVQLIKNGKKVTAFV 309
           QPNSAIRKCVRVQLIKNGKKVTAFV
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKVTAFV 85



 Score = 88.6 bits (210), Expect = 4e-19
 Identities = 40/56 (71%), Positives = 45/56 (80%)
 Frame = +2

Query: 311 PXDGCLNHIEXNDEVLXAGFGRKGHAVGDIPGVRFKVVKVXNVSLLALYKEKKERP 478
           P DGCLN ++ NDEVL +GFGRKG A GDIPGVRFKVVKV  V L AL+ EKKE+P
Sbjct: 86  PHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKP 141


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  141 bits (342), Expect = 4e-35
 Identities = 64/85 (75%), Positives = 74/85 (87%)
 Frame = +1

Query: 55  MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVXAK 234
           MGKP G+  ARK  NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GV AK
Sbjct: 1   MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAK 60

Query: 235 QPNSAIRKCVRVQLIKNGKKVTAFV 309
           QPNSAIRKCVRVQLIKNGKKVTAFV
Sbjct: 61  QPNSAIRKCVRVQLIKNGKKVTAFV 85



 Score = 88.6 bits (210), Expect = 4e-19
 Identities = 40/56 (71%), Positives = 45/56 (80%)
 Frame = +2

Query: 311 PXDGCLNHIEXNDEVLXAGFGRKGHAVGDIPGVRFKVVKVXNVSLLALYKEKKERP 478
           P DGCLN ++ NDEVL +GFGRKG A GDIPGVRFKVVKV  V L AL+ EKKE+P
Sbjct: 86  PHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKP 141


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 35.9 bits (79), Expect = 0.003
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = +1

Query: 181 GASHAKGIVLEKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFV 309
           G+   +G+      V  K+PNSA+RK  RV+L   G+ VTA++
Sbjct: 47  GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYI 88


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +1

Query: 118 WADKEFKKAHMGTKWKANPFGGASHAKGIV 207
           W D EF   H   K+   PF   +H K  V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = -2

Query: 124 PPIAVHDGGSRAYAP 80
           PP AV  GGSR YAP
Sbjct: 781 PPPAVSAGGSRYYAP 795


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 177 ERVSLPFRTHVGFLEFFVRPSLFTTVVHVLTRRSYS 70
           E + LP R  +  L FF +PSL + + +++  ++ S
Sbjct: 200 EPLPLPARPQISDLSFFRKPSLPSALQNIVIEKNAS 235


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -1

Query: 470 PFSLCRERGETRWXLLPP*NELRECHRRRDLYDRIPPXVLRRFXRCGLGNRXRG 309
           P+S   ER E RW L    N +   H+   ++        +RF R G+    RG
Sbjct: 255 PYSRYLERREQRWKLFLQENGIDYIHQSPSIFPSRSAKT-QRFIRKGIPPEYRG 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,044,995
Number of Sequences: 5004
Number of extensions: 40498
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)