Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_G23
         (479 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              150   5e-37
SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              106   8e-24
SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)         32   0.28 
SB_33690| Best HMM Match : Fer4 (HMM E-Value=2.1)                      31   0.37 
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_48328| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.5  
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)                   28   3.5  
SB_17589| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.5  
SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20)                 27   6.1  
SB_33607| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)                 27   6.1  
SB_47788| Best HMM Match : Cir_Bir_Yir (HMM E-Value=8.6)               27   8.0  
SB_4381| Best HMM Match : RVT_1 (HMM E-Value=3)                        27   8.0  

>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 413

 Score =  150 bits (364), Expect = 5e-37
 Identities = 69/83 (83%), Positives = 76/83 (91%)
 Frame = +1

Query: 61  KPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVXAKQP 240
           KPRG+RTARK  +HRR+Q+W DK +KKAH+GT  KANPFGGASHAKGIVLEKVGV AKQP
Sbjct: 2   KPRGLRTARKLRSHRRDQKWHDKAYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQP 61

Query: 241 NSAIRKCVRVQLIKNGKKVTAFV 309
           NSAIRKCVRVQLIKNGKK+TAFV
Sbjct: 62  NSAIRKCVRVQLIKNGKKITAFV 84



 Score = 64.9 bits (151), Expect = 3e-11
 Identities = 26/33 (78%), Positives = 30/33 (90%)
 Frame = +2

Query: 311 PXDGCLNHIEXNDEVLXAGFGRKGHAVGDIPGV 409
           P DGCLN+IE NDEVL +GFGR+GHAVGDIPG+
Sbjct: 85  PNDGCLNYIEENDEVLISGFGRRGHAVGDIPGI 117


>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 143

 Score =  106 bits (255), Expect = 8e-24
 Identities = 48/56 (85%), Positives = 52/56 (92%)
 Frame = +2

Query: 311 PXDGCLNHIEXNDEVLXAGFGRKGHAVGDIPGVRFKVVKVXNVSLLALYKEKKERP 478
           P DGCLN+IE NDEVL +GFGR+GHAVGDIPGVRFKVVKV NVSLLAL+KEKKERP
Sbjct: 86  PNDGCLNYIEENDEVLISGFGRRGHAVGDIPGVRFKVVKVANVSLLALFKEKKERP 141



 Score = 61.7 bits (143), Expect = 3e-10
 Identities = 28/33 (84%), Positives = 31/33 (93%)
 Frame = +1

Query: 211 EKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFV 309
           ++ GV AKQPNSAIRKCVRVQLIKNGKK+TAFV
Sbjct: 53  QEPGVEAKQPNSAIRKCVRVQLIKNGKKITAFV 85


>SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)
          Length = 302

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +1

Query: 196 KGIVLEKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFV 309
           KG+ ++      K+PNSA RKC  ++L  NGK ++A++
Sbjct: 230 KGVCVKVFIRKPKKPNSAQRKCALLKL-SNGKTISAYI 266


>SB_33690| Best HMM Match : Fer4 (HMM E-Value=2.1)
          Length = 488

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
 Frame = -1

Query: 278 MSCTRTHLRMAELGCLAXTPTFSR-----TMPFA*DAPPKGLAFHFVPMWAFLNSLSAHR 114
           M C   +    E+ C    PT  R     T     DA P GL  H   M   L+  +  R
Sbjct: 58  MPCQLDYPNYREMPCQLDCPTTERCPANWTTQLQRDALPTGLPKHR-EMPCQLDYPTTER 116

Query: 113 CSRRWFTCLRAVRIPRGLP 57
           C   W T L+   +P GLP
Sbjct: 117 CPANWTTQLQRDALPTGLP 135



 Score = 28.7 bits (61), Expect = 2.6
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
 Frame = -1

Query: 245 ELGCLAXTPTFSR-----TMPFA*DAPPKGLAFHFVPMWAFLNSLSAHRCSRRWFTCLRA 81
           E+ C    PT  R     T     DA P GL  ++  M   L+  +  RC   W T L+ 
Sbjct: 139 EMPCQLDYPTTERCPANWTTQLQRDALPTGLP-NYREMSCQLDYPTTERCPANWTTQLQR 197

Query: 80  VRIPRGLP 57
             +P GLP
Sbjct: 198 DTLPTGLP 205



 Score = 28.3 bits (60), Expect = 3.5
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
 Frame = -1

Query: 245 ELGCLAXTPTFSR-----TMPFA*DAPPKGLAFHFVPMWAFLNSLSAHRCSRRWFTCLRA 81
           E+ C    PT  R     T     DA P GL  ++  M   L+  +  RC   W T L+ 
Sbjct: 104 EMPCQLDYPTTERCPANWTTQLQRDALPTGLP-NYREMPCQLDYPTTERCPANWTTQLQR 162

Query: 80  VRIPRGLP 57
             +P GLP
Sbjct: 163 DALPTGLP 170


>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 141 SPHGYEMEG*PFRWCISRKGHRPRESWCXS*AA 239
           S HG  MEG P  W +S  G  P+ S C S +A
Sbjct: 85  SQHGTRMEGVPVCWYVSVWGLSPQVSQCDSVSA 117


>SB_48328| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 513

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 69  SGFTHLDSTTPIGYGWEKKLIG 4
           SGF + D  T  G GWE K+ G
Sbjct: 294 SGFVYPDGQTMFGLGWEMKISG 315


>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
          Length = 943

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -1

Query: 209  RTMPFA*D-APPKGLAFHFVPMW-AFLN-SLSAHR 114
            R +PF+   APPKG  F  VP+W +F N S+  HR
Sbjct: 902  RKVPFSSVLAPPKGYRFLIVPLWRSFSNRSVFGHR 936


>SB_17589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 69 SGFTHLDSTTPIGYGWEKKLIG 4
          SGF + D  T  G GWE K+ G
Sbjct: 11 SGFVYPDGQTMFGLGWEMKISG 32


>SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20)
          Length = 255

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 101 TVVNSDGRTKNSRKPTWVRNGRLTLSVVHLT 193
           T V    R  N++KP  +R+GR+T+S+  +T
Sbjct: 103 THVQFHHRDTNTKKPVHLRDGRVTVSLAAMT 133


>SB_33607| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
          Length = 256

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 133 ILCPPIAVHDGGSRAYAPFV 74
           ++ PP  + DG SRA+APF+
Sbjct: 215 LIKPPSTIVDGRSRAHAPFI 234


>SB_47788| Best HMM Match : Cir_Bir_Yir (HMM E-Value=8.6)
          Length = 294

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -3

Query: 309 DECGHFLSVLNELYTDAFADGRVGLLSXYTNFLED 205
           D+   F    NE      AD R GL+    NF+ED
Sbjct: 114 DKLNRFFVTTNERTLGTKADDRSGLIELVNNFVED 148


>SB_4381| Best HMM Match : RVT_1 (HMM E-Value=3)
          Length = 471

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -3

Query: 309 DECGHFLSVLNELYTDAFADGRVGLLSXYTNFLED 205
           D+   F    NE      AD R GL+    NF+ED
Sbjct: 163 DKLNRFFVTTNERTLGTKADDRSGLIELVNNFVED 197


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,176,088
Number of Sequences: 59808
Number of extensions: 348816
Number of successful extensions: 708
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)