Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_G23
(479 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S... 152 7e-37
CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein. 152 7e-37
BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23 p... 152 7e-37
AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23 p... 106 3e-23
Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal p... 37 0.032
CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein. 37 0.032
BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal... 37 0.032
BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal... 37 0.032
BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal... 37 0.032
AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12 p... 37 0.032
AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein. 30 4.8
>D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S28
homologue protein.
Length = 143
Score = 152 bits (368), Expect = 7e-37
Identities = 70/85 (82%), Positives = 78/85 (91%)
Frame = +1
Query: 55 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVXAK 234
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGV AK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 235 QPNSAIRKCVRVQLIKNGKKVTAFV 309
QPNSAIRKCVRVQLIKNGKK+TAFV
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFV 85
Score = 106 bits (255), Expect = 3e-23
Identities = 50/56 (89%), Positives = 50/56 (89%)
Frame = +2
Query: 311 PXDGCLNHIEXNDEVLXAGFGRKGHAVGDIPGVRFKVVKVXNVSLLALYKEKKERP 478
P DGCLN IE NDEVL AGFGRKGHAVGDIPGVRFKVVKV NVSLLALYK KKERP
Sbjct: 86 PNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERP 141
>CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein.
Length = 143
Score = 152 bits (368), Expect = 7e-37
Identities = 70/85 (82%), Positives = 78/85 (91%)
Frame = +1
Query: 55 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVXAK 234
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGV AK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 235 QPNSAIRKCVRVQLIKNGKKVTAFV 309
QPNSAIRKCVRVQLIKNGKK+TAFV
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFV 85
Score = 106 bits (255), Expect = 3e-23
Identities = 50/56 (89%), Positives = 50/56 (89%)
Frame = +2
Query: 311 PXDGCLNHIEXNDEVLXAGFGRKGHAVGDIPGVRFKVVKVXNVSLLALYKEKKERP 478
P DGCLN IE NDEVL AGFGRKGHAVGDIPGVRFKVVKV NVSLLALYK KKERP
Sbjct: 86 PNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERP 141
>BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23
protein.
Length = 143
Score = 152 bits (368), Expect = 7e-37
Identities = 70/85 (82%), Positives = 78/85 (91%)
Frame = +1
Query: 55 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVXAK 234
MGK RG+RTARK +HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGV AK
Sbjct: 1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAK 60
Query: 235 QPNSAIRKCVRVQLIKNGKKVTAFV 309
QPNSAIRKCVRVQLIKNGKK+TAFV
Sbjct: 61 QPNSAIRKCVRVQLIKNGKKITAFV 85
Score = 106 bits (255), Expect = 3e-23
Identities = 50/56 (89%), Positives = 50/56 (89%)
Frame = +2
Query: 311 PXDGCLNHIEXNDEVLXAGFGRKGHAVGDIPGVRFKVVKVXNVSLLALYKEKKERP 478
P DGCLN IE NDEVL AGFGRKGHAVGDIPGVRFKVVKV NVSLLALYK KKERP
Sbjct: 86 PNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERP 141
>AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23
protein.
Length = 59
Score = 106 bits (255), Expect = 3e-23
Identities = 50/56 (89%), Positives = 50/56 (89%)
Frame = +2
Query: 311 PXDGCLNHIEXNDEVLXAGFGRKGHAVGDIPGVRFKVVKVXNVSLLALYKEKKERP 478
P DGCLN IE NDEVL AGFGRKGHAVGDIPGVRFKVVKV NVSLLALYK KKERP
Sbjct: 3 PNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERP 58
>Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 precursor protein.
Length = 138
Score = 37.1 bits (82), Expect = 0.032
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +1
Query: 163 KANPFGGASHAKGIVLEKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFV 309
K P G KG+VL K+PNSA RKC RV+L G++ F+
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFI 95
>CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein.
Length = 138
Score = 37.1 bits (82), Expect = 0.032
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +1
Query: 163 KANPFGGASHAKGIVLEKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFV 309
K P G KG+VL K+PNSA RKC RV+L G++ F+
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFI 95
>BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 37.1 bits (82), Expect = 0.032
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +1
Query: 163 KANPFGGASHAKGIVLEKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFV 309
K P G KG+VL K+PNSA RKC RV+L G++ F+
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFI 95
>BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 37.1 bits (82), Expect = 0.032
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +1
Query: 163 KANPFGGASHAKGIVLEKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFV 309
K P G KG+VL K+PNSA RKC RV+L G++ F+
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFI 95
>BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 37.1 bits (82), Expect = 0.032
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +1
Query: 163 KANPFGGASHAKGIVLEKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFV 309
K P G KG+VL K+PNSA RKC RV+L G++ F+
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFI 95
>AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12
protein.
Length = 138
Score = 37.1 bits (82), Expect = 0.032
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +1
Query: 163 KANPFGGASHAKGIVLEKVGVXAKQPNSAIRKCVRVQLIKNGKKVTAFV 309
K P G KG+VL K+PNSA RKC RV+L G++ F+
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFI 95
>AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein.
Length = 1332
Score = 29.9 bits (64), Expect = 4.8
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +3
Query: 141 SPHGYEMEG*PFRWCISRKGHRPRESWCXS*AAQLCHPQMRPC 269
SPHG +M G P RP ES+C PQ RPC
Sbjct: 37 SPHGPDMSG-PLEGADGGGDPRPGESFCPGGVPSPGPPQHRPC 78
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,201,115
Number of Sequences: 237096
Number of extensions: 1622078
Number of successful extensions: 3512
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3512
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4270724850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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