Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_G23
         (479 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    27   0.10 
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    27   0.10 
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    27   0.10 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   0.97 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   0.97 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.7  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   2.2  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   3.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   3.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   3.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   3.9  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   6.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.1  

>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 27.1 bits (57), Expect = 0.10
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 335 CGLGNRXRGTNAVTFFPFLMSCTRTH 258
           CG GN+  G N +  F    +C RTH
Sbjct: 37  CGHGNKSSGPNELGRFKHTDACCRTH 62


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 27.1 bits (57), Expect = 0.10
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 335 CGLGNRXRGTNAVTFFPFLMSCTRTH 258
           CG GN+  G N +  F    +C RTH
Sbjct: 42  CGHGNKSSGPNELGRFKHTDACCRTH 67


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 27.1 bits (57), Expect = 0.10
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 335 CGLGNRXRGTNAVTFFPFLMSCTRTH 258
           CG GN+  G N +  F    +C RTH
Sbjct: 42  CGHGNKSSGPNELGRFKHTDACCRTH 67


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 0.97
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 380 GHAVGDIPGVRFKVVKVXNVSLL 448
           GH V D+PGVR +V++   + LL
Sbjct: 69  GHPVNDVPGVR-RVLRNGTLVLL 90


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 0.97
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 380 GHAVGDIPGVRFKVVKVXNVSLL 448
           GH V D+PGVR +V++   + LL
Sbjct: 69  GHPVNDVPGVR-RVLRNGTLVLL 90


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +2

Query: 380 GHAVGDIPGVR 412
           G AVGD+PG+R
Sbjct: 42  GSAVGDVPGLR 52


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
 Frame = +1

Query: 76  RTARKHVNHRRE----QRWADKEFKKAH--MGTKWKANPFGGASHAKGIVLEKVGVXAKQ 237
           RT  + + +RRE    Q+  ++E++K    M  +++       +H K +VLE+    +K 
Sbjct: 30  RTKEERLQYRREAWLVQQEREQEYEKLKRKMILEYELYIKYSHTHEKKLVLERSKTKSKS 89

Query: 238 PNSAIR 255
           P S  R
Sbjct: 90  PESRDR 95


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 179 PKGLAFHFVPMWAFLNSLSA 120
           PK +A H++  W FL+ +S+
Sbjct: 157 PKLIAKHYLRTWFFLDLISS 176


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 179 PKGLAFHFVPMWAFLNSLSA 120
           PK +A H++  W FL+ +S+
Sbjct: 157 PKLIAKHYLRTWFFLDLISS 176


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 179 PKGLAFHFVPMWAFLNSLSA 120
           PK +A H++  W FL+ +S+
Sbjct: 157 PKLIAKHYLRTWFFLDLISS 176


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +1

Query: 238 PNSAIRKCV 264
           PNSA+RKC+
Sbjct: 584 PNSAVRKCM 592


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 327 RQPSXGDECGHFLSVLNELYT 265
           R+P+ G      LSVL EL T
Sbjct: 516 RRPNPGTVFARLLSVLTELRT 536


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 252 DGRVGLLSXYTNFLEDDA 199
           DG   + S Y N  EDDA
Sbjct: 407 DGFESVTSQYKNIREDDA 424


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,353
Number of Sequences: 438
Number of extensions: 2867
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)