Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_G22
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    26   5.5  
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    25   9.6  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    25   9.6  

>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 579 ERGGQPTGLKFSLT 620
           +RGGQPTG+ F +T
Sbjct: 185 DRGGQPTGILFGVT 198


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 251 TAIYGFFYFNFQEHTSSI 198
           +A +GFF F+FQ H  S+
Sbjct: 350 SASWGFFLFSFQVHEKSV 367


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +3

Query: 444 PQFIIPSSFSRFDKPLNLDYIEXXSILQKNTSLGQDDDIHR 566
           P FI+P +  + D+   +  I+  +++   T+   D D H+
Sbjct: 694 PAFIVPGTHQKLDESSPVPGIDDVTVINTETAKMLDKDEHQ 734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,687,213
Number of Sequences: 5004
Number of extensions: 53678
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)