Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_G21
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...   116   4e-27
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    31   0.14 
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   4.1  
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    25   7.2  
SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces po...    25   7.2  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    25   7.2  
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    25   9.5  
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    25   9.5  

>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score =  116 bits (278), Expect = 4e-27
 Identities = 62/170 (36%), Positives = 91/170 (53%), Gaps = 5/170 (2%)
 Frame = +3

Query: 126 RFSSYFVIFCSVIIFAQSDVPRP---RGVSLSKASLYLPTK--DFTCFDGTATIPFSYVN 290
           +FS ++ +   ++I +   V      RGV+  K+ LY P    ++ C      I F+ VN
Sbjct: 2   KFSQWYTLTAPLLISSLYTVNAANDLRGVASDKSDLYKPDAKGNWKCLGSDKLISFNQVN 61

Query: 291 DDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSXVNDGVCDCCDGTDEYANPTAC 470
           DDYCDC DGSDEPGTSAC NG F C N G+    +PS+ V+D VCDCCDG+DE  +   C
Sbjct: 62  DDYCDCPDGSDEPGTSACHNGKFFCKNTGYISSYIPSNRVDDTVCDCCDGSDE--SLIKC 119

Query: 471 TNICEELGKEARAEAQRVAELHKAGSQLXIDLIQKGNXKRNEMAEQLTQL 620
            N C +  +E  A  +    L K G ++      +   K +E+  +  ++
Sbjct: 120 PNTCAQKAREYLATLEEHNRLVKNGLKIREQWALESAKKTDEVKARYKEI 169


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
 Frame = +3

Query: 279 SYVNDDYCDCFDGSD-EPGTSACINGVFHCTNAGHRPQNLPSSXVNDGVCDCCDGTDEYA 455
           SY     C    GS  +PG+    +  F C   G R   +P S      CD C GT    
Sbjct: 233 SYSVSSTCSSCHGSGLQPGSHK--STCFACKGTGQRLHFIPPSFHMQTTCDSCGGTGTTI 290

Query: 456 NPTACTNIC 482
            P +    C
Sbjct: 291 PPNSACRSC 299


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = -3

Query: 133  ENRSIHVLQTMVIV*LTINEIP 68
            ENRS+ +LQT ++V +T++ IP
Sbjct: 1355 ENRSLTLLQTTLLVLVTVHLIP 1376


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 468 CTNICEELGKEARAEAQRVAELHKAGSQLXIDLIQKGNXKRNEMAEQ-LTQLEKD 629
           C + C E  +  R E      L +  SQL   +    + ++NE  E+ + +++KD
Sbjct: 486 CIDACNEASEVDRREPNTGKNLREIESQLSKCMSAMASQRQNETEEETMARIQKD 540


>SPAC513.06c |||dihydrodiol dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +3

Query: 165 IFAQSDVPRPRGVSLSKASLYLPTKDFTCFDGTATIPFSYVNDDYCDC 308
           +F   D  RP+ + L +AS      DF+  D T    F Y  D   +C
Sbjct: 281 LFISGDCYRPQSIKLIRASGETEVFDFSFDDATG---FFYEQDAVAEC 325


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 200 CIFV*SISLFTDKRFYLF*WNCY 268
           C F   I+ F D+ FY   WNC+
Sbjct: 341 CNFSAEITRFADRNFYDDWWNCW 363


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +3

Query: 291 DDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSXVNDGVCDCCDGTDEYAN 458
           DD    F  S      A      + +NAGH  QNL +  V+  V    +G +E +N
Sbjct: 250 DDIASDFFSSPSADLEADDFTTLNNSNAGHLLQNLSNDNVSVSVKALENGNEEVSN 305


>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 171 AQSDVPRPRGVSLSKASLYLPTKDFTCFDGTATIPFSYVNDDY 299
           A++ +P P  VS++   + +PT+D T  DG    P S V  DY
Sbjct: 50  AETILPLPDDVSVT--DILIPTRDGTEIDGRVFTPVS-VPADY 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,269,778
Number of Sequences: 5004
Number of extensions: 45395
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)