Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_G21
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1206 - 9702128-9702184,9702272-9702323,9702410-9702471,970...   128   5e-30
01_06_0731 - 31555078-31555082,31555750-31555857,31555948-315561...    74   9e-14
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039...    29   3.2  
02_05_0075 - 25610386-25610508,25610529-25610583,25610801-256112...    29   3.2  
03_01_0207 - 1633177-1633372,1633623-1633688,1633778-1633859,163...    28   5.6  
11_01_0173 - 1392046-1392975                                           27   9.8  

>01_01_1206 -
           9702128-9702184,9702272-9702323,9702410-9702471,
           9702578-9702665,9703027-9703095,9703224-9703281,
           9703895-9703996,9704075-9704179,9704273-9704624,
           9706005-9706100,9706427-9706501,9707192-9707370,
           9707501-9707740,9707922-9708017,9708193-9708306,
           9708428-9708527
          Length = 614

 Score =  128 bits (308), Expect = 5e-30
 Identities = 57/128 (44%), Positives = 78/128 (60%)
 Frame = +3

Query: 249 CFDGTATIPFSYVNDDYCDCFDGSDEPGTSACINGVFHCTNAGHRPQNLPSSXVNDGVCD 428
           C DG+       +NDD+CDC DG+DEPGTSAC  G F+C NAGH P  + SS VNDG+CD
Sbjct: 45  CRDGSGRFARDKLNDDFCDCPDGTDEPGTSACPEGKFYCQNAGHSPITIFSSRVNDGICD 104

Query: 429 CCDGTDEYANPTACTNICEELGKEARAEAQRVAELHKAGSQLXIDLIQKGNXKRNEMAEQ 608
           CCDG+DEY +   C N C E GK AR + ++    +K+G  +    IQK      +   +
Sbjct: 105 CCDGSDEYDSNVTCKNTCWEAGKAARDKLKKKVATYKSGVVIRNQEIQKAKVAFAKDEAE 164

Query: 609 LTQLEKDK 632
           L +L+ ++
Sbjct: 165 LAKLKGEE 172


>01_06_0731 -
           31555078-31555082,31555750-31555857,31555948-31556166,
           31556320-31556415,31557264-31557387
          Length = 183

 Score = 74.1 bits (174), Expect = 9e-14
 Identities = 31/59 (52%), Positives = 38/59 (64%)
 Frame = +3

Query: 315 GSDEPGTSACINGVFHCTNAGHRPQNLPSSXVNDGVCDCCDGTDEYANPTACTNICEEL 491
           G    GTSAC +G F+C NAG  P+ L SS VND +CDCCDG+DEY +   C N C  +
Sbjct: 37  GVSPQGTSACPDGRFYCRNAGDTPRLLFSSVVNDKICDCCDGSDEYESGIRCPNTCRNI 95



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +3

Query: 279 SYVNDDYCDCFDGSDE 326
           S VND  CDC DGSDE
Sbjct: 66  SVVNDKICDCCDGSDE 81


>02_05_0484 -
           29401195-29401404,29401572-29401755,29401866-29403973,
           29404320-29404403,29404507-29404777,29404864-29405117,
           29405513-29405722,29406357-29406503
          Length = 1155

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +3

Query: 483 EELGKEARAEAQRVAELHKAGSQLXIDLIQKGNXKRNEMAEQLTQLEK 626
           EEL K  RA+ QR  +LH+   +L +++ +K   K  E+ E+  +L +
Sbjct: 584 EELLKRERADLQRNLQLHR--HELEMEMEKKQASKERELEEKENELNR 629


>02_05_0075 -
           25610386-25610508,25610529-25610583,25610801-25611240,
           25612951-25613619,25614551-25615870
          Length = 868

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 133 PPIS*YFVPSSYLPSPMCLDPAVYLCLKHLSIYRQKIL 246
           PP S +  P +Y PSP    P +   L++ S+Y Q +L
Sbjct: 102 PPSSRHIFPFAYDPSPGAAAPRLLPLLQYSSLYPQPLL 139


>03_01_0207 -
           1633177-1633372,1633623-1633688,1633778-1633859,
           1633942-1634037,1634413-1634518,1634602-1634661,
           1635114-1635234,1635929-1636040,1636118-1636217,
           1636328-1636382,1636489-1636595,1636798-1636850,
           1636989-1637114,1637909-1638065,1638226-1638421,
           1638917-1639073,1639139-1639379,1639475-1639605,
           1639704-1639826,1639929-1639984,1640610-1640767,
           1640847-1640984,1641070-1641123
          Length = 896

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 202 TPRGLGTSDWANMMTEQNITK*EENRSIHVLQTMVI 95
           TP+G    DW      Q +TK   N S  VLQT++I
Sbjct: 842 TPKGDKGGDWVVDEVHQRVTKPGTNVSYAVLQTVMI 877


>11_01_0173 - 1392046-1392975
          Length = 309

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/60 (23%), Positives = 31/60 (51%)
 Frame = -2

Query: 593 ISLXISFLYEVYXQLAACFMQLCYSLSFCSGFFSELFTNVSTGRRISVFICSITAITDSV 414
           ++  ++F+Y    +LAAC   LC ++   +  + +L  N + G+++     + +A  D V
Sbjct: 215 VAAALNFIYRTQKELAACTDDLCLTMDGSATSY-QLLGNFAAGQKLYRLETTTSADGDGV 273


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,138,113
Number of Sequences: 37544
Number of extensions: 280285
Number of successful extensions: 642
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)