Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_G20
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...   100   2e-22
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.9  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score =  100 bits (239), Expect = 2e-22
 Identities = 48/76 (63%), Positives = 57/76 (75%), Gaps = 1/76 (1%)
 Frame = +1

Query: 394 QVIIEPHRHPGVFIXRGKXXALVTKNLVPXSXVYGEXXISLDN-ERDKVEYXVWNPFXSK 570
           +VIIEPHRH GVFI RGK   LVT+NLVP   VY E  IS+D+ +  KVEY VWNPF SK
Sbjct: 72  KVIIEPHRHAGVFIARGKEDLLVTRNLVPGESVYNEKRISVDSPDGTKVEYRVWNPFRSK 131

Query: 571 LAAAIMGGVDAIHMAP 618
           LAA I+GG+D I++ P
Sbjct: 132 LAAGILGGLDNIYIKP 147


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +2

Query: 536 WSTXSGIRSXRNWQLQLWVEWMLYTWPL 619
           WS+   IR   N +L  W EW     PL
Sbjct: 277 WSSVDEIRDVHNKRLDAWSEWKQKLLPL 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,437,664
Number of Sequences: 5004
Number of extensions: 16427
Number of successful extensions: 35
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)