Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_G16
         (581 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   3.8  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   5.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.1  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   5.1  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   6.7  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 325 EAACKGPSPHANQDPAYHH 381
           E +  G SPH +Q P+ +H
Sbjct: 621 EISQDGSSPHFHQSPSQNH 639


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -3

Query: 111 GSPCCLLNSGRDKQLFNQKLFSAEPEKPHVSSN 13
           GS   +LN   ++Q+ + K F+  P+K ++  N
Sbjct: 500 GSLYAILNFSNEEQIVDLKAFNNVPKKLNMFYN 532


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 307 QWSQETEAACKGPSPHANQDP 369
           Q SQ+  +   GP P  +Q P
Sbjct: 11  QQSQQPSSGAPGPQPSPHQSP 31


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -3

Query: 111 GSPCCLLNSGRDKQLFNQKLFSAEPEKPHVSSN 13
           GS   +LN   ++Q+ + K F+  P+K ++  N
Sbjct: 500 GSLYAILNFSNEEQIVDLKAFNNVPKKLNMFYN 532


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -1

Query: 140 GHDICSKFY 114
           GH++C +FY
Sbjct: 122 GHEVCGRFY 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,512
Number of Sequences: 438
Number of extensions: 3532
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)