Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_G14
         (641 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   4.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   4.9  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   6.5  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   6.5  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = +3

Query: 102 IMWKLLQESPTAYAIQFN----KENGYEIFITDFIYL 200
           ++W L++ +PT Y I  +        +E F+++  YL
Sbjct: 232 VVWPLVENNPTLYLIPVSVILISVGWWENFVSETSYL 268


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = +3

Query: 102 IMWKLLQESPTAYAIQFN----KENGYEIFITDFIYL 200
           ++W L++ +PT Y I  +        +E F+++  YL
Sbjct: 232 VVWPLVENNPTLYLIPVSVILISVGWWENFVSETSYL 268


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/32 (31%), Positives = 11/32 (34%)
 Frame = +3

Query: 495 WTSQTILRNTLNXKDKXLTAYKTKFGEIQHKH 590
           WT      N    K K     K K   +Q KH
Sbjct: 61  WTEINAFANVSPSKTKFFNLIKRKDSPVQKKH 92


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/32 (31%), Positives = 11/32 (34%)
 Frame = +3

Query: 495 WTSQTILRNTLNXKDKXLTAYKTKFGEIQHKH 590
           WT      N    K K     K K   +Q KH
Sbjct: 61  WTEINAFANVSPPKTKFFNLIKRKDSPVQKKH 92


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,553
Number of Sequences: 336
Number of extensions: 2869
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)