Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_G14
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    29   0.43 
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ...    28   1.00 
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    27   2.3  
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|...    25   9.3  

>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 150 FNKENGYEIFITDFIYLWHVYFTERTFLTQLKESNDGIXFEND 278
           F K + + +F+   + L   YF + T LT+ KESN  + F N+
Sbjct: 40  FTKTHLHRLFVFVVLLLCSGYFLKHTLLTRPKESNVVMIFVNN 82


>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 639

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 462 TQNLLKIINDLWTSQTILRNTLNXKDKXLTAYKTKFGEI 578
           T +L+ +IN  WT Q ++ +TLN +   +T      G++
Sbjct: 256 TVDLIPMINHSWTYQALIHDTLNMQLNRITVESVDDGKM 294


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 19/48 (39%), Positives = 27/48 (56%)
 Frame = +3

Query: 240 LKESNDGIXFENDSQLLQDGIKLLVQPENLKKVNVFEXNEXRNLSITL 383
           LKE+ D + F+  S++LQD ++L      L K N FE    +NLS  L
Sbjct: 135 LKETLDNVDFDARSKILQD-LRLEYAEILLTKFN-FEKKGYQNLSSAL 180


>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 362

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
 Frame = +3

Query: 414 KCXLSRVSDEMMFQKITQNL-LKIINDLWT---SQTILRNTLNXKDKXLTAYKTKFGEIQ 581
           KC L+R+ DE+   ++T +L  K I  +W+   S T  R  L   +K     K  +  I+
Sbjct: 135 KCFLARLEDEVFQGRLTSSLEKKEIGIVWSKSFSTTAGRANLKRNNKDAPLGKKTYAYIE 194

Query: 582 HKHK 593
              K
Sbjct: 195 LSDK 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,396,826
Number of Sequences: 5004
Number of extensions: 44849
Number of successful extensions: 136
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)