Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_G12
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces...    66   2e-12
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    25   3.5  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   4.7  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    25   4.7  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    24   6.2  
SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po...    24   6.2  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    24   8.2  
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c...    24   8.2  

>SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 61

 Score = 66.1 bits (154), Expect = 2e-12
 Identities = 30/53 (56%), Positives = 37/53 (69%)
 Frame = +1

Query: 49  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGHGSKIFKESKVLQEG*PEA 207
           MAKSKNHTNHNQN+KAHRNGIK+P+K R++S     +K  +  K    G  EA
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGIKRPQKHRYDSLKYRDAKFRRNQKFANRGTVEA 53


>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 49  MAKSKNHTNHNQNRKAHRNGIKKPRK 126
           +AK  +  NHN ++ A +  I +PRK
Sbjct: 340 LAKRDDRKNHNHSKPATQANILQPRK 365


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 8/35 (22%), Positives = 21/35 (60%)
 Frame = +1

Query: 58  SKNHTNHNQNRKAHRNGIKKPRKTRHESTLGHGSK 162
           S   +++  NR+ +R  +++P  ++  +  G+GS+
Sbjct: 201 SNFESSNGSNRRRYRTQMEEPLSSKRRNRFGNGSR 235


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 80  TKTAKLTEMVSKSQGRPGTN 139
           T  A +T++VSK  G PG N
Sbjct: 220 TNPADITDLVSKYAGPPGNN 239


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 67  HTNHNQNRKAHRNGIKKPRKTRHES 141
           HTN  +NR+  + G  K R  R E+
Sbjct: 887 HTNPQENRRRDKGGSVKRRNERTEN 911


>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 328

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 79  NQNRKAHRNGIKKPRKTRHESTLGHGSKIFKESKVLQEG 195
           N N   +   +    K RH ++L +  K+  E+KVL +G
Sbjct: 189 NANYPFNPQEVNTLNKHRHSASLQNLYKLLDENKVLMQG 227


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 91  KAHRNG-IKKPRKTRHESTLGHGSKIFKESKVLQEG 195
           + H  G I KPRK R EST     +I KES   ++G
Sbjct: 350 EVHLTGEILKPRKKRQEST-SSVHRIGKESSDRKDG 384


>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +1

Query: 61  KNHTNHNQNRKAHRNGIKKPRKTRHESTLGHGSKIFKESKVL 186
           K H+ +  ++K+++NG KK RK   +S   H     + +++L
Sbjct: 178 KTHSLNKASKKSNKNGDKK-RKHVSKSNSKHAKHELRTNRML 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,180,575
Number of Sequences: 5004
Number of extensions: 20633
Number of successful extensions: 67
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)