Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_G12
         (359 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0115 - 11248021-11248101,11249017-11249118                       59   9e-10
05_03_0661 - 16726958-16726966,16727133-16727234                       56   8e-09
01_01_0811 + 6303898-6304141,6304254-6304621,6304692-6304956,630...    29   0.83 
11_06_0526 - 24585161-24587119                                         28   2.5  

>01_02_0115 - 11248021-11248101,11249017-11249118
          Length = 60

 Score = 59.3 bits (137), Expect = 9e-10
 Identities = 27/59 (45%), Positives = 38/59 (64%)
 Frame = +1

Query: 49  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGHGSKIFKESKVLQEG*PEASQATRE 225
           MAKSKNHT HNQ+ KAH+NGIKKP++ R  ST G   K  +  +  ++   ++ +A  E
Sbjct: 1   MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNQRYSRKHNKKSGEAESE 59


>05_03_0661 - 16726958-16726966,16727133-16727234
          Length = 36

 Score = 56.0 bits (129), Expect = 8e-09
 Identities = 24/34 (70%), Positives = 28/34 (82%)
 Frame = +1

Query: 49  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLG 150
           MAKSKNHT HNQ+ KAH+NGIKKP++ R  ST G
Sbjct: 1   MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKG 34


>01_01_0811 +
           6303898-6304141,6304254-6304621,6304692-6304956,
           6305040-6305241,6306950-6307140,6308524-6308531,
           6308689-6308703
          Length = 430

 Score = 29.5 bits (63), Expect = 0.83
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 182 TFDSLKILDPWPRVDSCLVFLGFLIPFL 99
           T DS  +L PW   DSC  F G ++P++
Sbjct: 389 TRDSCGLLRPWLTEDSCAGFTGTVVPWI 416


>11_06_0526 - 24585161-24587119
          Length = 652

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 120 KEDQARIHPWPWIQNF*GIKGFARRV 197
           KED AR+H W +I NF   K    +V
Sbjct: 387 KEDTARVHSWRFIGNFTNAKTLKLKV 412


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,574,719
Number of Sequences: 37544
Number of extensions: 136147
Number of successful extensions: 459
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)