Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_G12
(359 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26383| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.49
SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.49
SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.65
SB_12462| Best HMM Match : Kinesin (HMM E-Value=0) 29 0.86
SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9) 29 1.1
SB_40598| Best HMM Match : Stap_Strp_toxin (HMM E-Value=2.7) 29 1.1
SB_14036| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.0
SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.5
SB_50356| Best HMM Match : PaaX (HMM E-Value=3.6) 27 3.5
SB_36161| Best HMM Match : SecIII_SopE_N (HMM E-Value=4.1) 27 3.5
SB_33977| Best HMM Match : CUE (HMM E-Value=0.52) 27 3.5
SB_31788| Best HMM Match : Kazal_1 (HMM E-Value=0) 27 4.6
SB_6986| Best HMM Match : Ribosomal_L29e (HMM E-Value=1.6) 27 4.6
SB_51620| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.6
SB_25197| Best HMM Match : TatC (HMM E-Value=1.8) 27 4.6
SB_14572| Best HMM Match : ANF_receptor (HMM E-Value=6.7e-18) 27 4.6
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_48996| Best HMM Match : ASC (HMM E-Value=7.1e-08) 26 8.0
SB_48994| Best HMM Match : ASC (HMM E-Value=1.3e-11) 26 8.0
SB_4982| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-21) 26 8.0
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23) 26 8.0
>SB_26383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1142
Score = 30.3 bits (65), Expect = 0.49
Identities = 20/77 (25%), Positives = 32/77 (41%)
Frame = +1
Query: 37 KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGHGSKIFKESKVLQEG*PEASQA 216
+R K + N + +K H+ +++P+ ST G G + E K +E PE
Sbjct: 593 RRTKNIRLPNLKKRERRQKRHQKKVRQPKMRYGRSTEGEGRRERTEEK-QEEKVPEKEDK 651
Query: 217 TREGG*EKSYPRSKGQE 267
T E EK +E
Sbjct: 652 TEELDEEKKRQEENAKE 668
>SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1383
Score = 30.3 bits (65), Expect = 0.49
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +1
Query: 91 KAHRNGIKKPRKTRHESTLG 150
K HRNGIKKPR R+ S G
Sbjct: 175 KWHRNGIKKPRTNRYPSLKG 194
>SB_36850| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1008
Score = 29.9 bits (64), Expect = 0.65
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +1
Query: 43 IKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGHGSKIFKESKVLQE 192
IK N HNQ + + KK RK RH + KE K+L +
Sbjct: 123 IKQTSDNNKPQHNQKNTSKK---KKKRKDRHRKKQDQDPEPLKEKKILTQ 169
>SB_12462| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 803
Score = 29.5 bits (63), Expect = 0.86
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 11 LSSESKWIENASKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPP 145
+ +E W E A KW + +ITKT+ T V PG N P
Sbjct: 634 IKAECTWDEEAGKWNMPEL--VITKTSLPTPGVMPGGLTPGGNTP 676
>SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)
Length = 413
Score = 29.1 bits (62), Expect = 1.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 46 KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHEST 144
K AKSK NH ++ K R KK ++T +ST
Sbjct: 145 KNAKSKIKRNHGEDNKPKRISTKKRKRTDKDST 177
>SB_40598| Best HMM Match : Stap_Strp_toxin (HMM E-Value=2.7)
Length = 192
Score = 29.1 bits (62), Expect = 1.1
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 52 AKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGHGSKI 165
+K+ N TN NQ K P+KT ++T+ S +
Sbjct: 153 SKNNNQTNRNQGNTGITENTKSPKKTNIDATVPSDSSV 190
>SB_14036| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 658
Score = 28.3 bits (60), Expect = 2.0
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Frame = +2
Query: 26 KWIENAS----KWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLAMDPKFLR 172
KW NAS WQ+ I + + K EM S + R N DPK +R
Sbjct: 80 KWHRNASHNSTSWQNINIHESLAKELARDEMQSNERRRAQANSEQKTDPKGVR 132
>SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 633
Score = 27.5 bits (58), Expect = 3.5
Identities = 14/68 (20%), Positives = 28/68 (41%)
Frame = +1
Query: 91 KAHRNGIKKPRKTRHESTLGHGSKIFKESKVLQEG*PEASQATREGG*EKSYPRSKGQEM 270
K H + ++ ++T+G +I E + Q+ P+ + + +G Y E
Sbjct: 198 KEHMPNTPQENNSKVDTTIGQSKEIVVEGENTQQCAPQMASTSSKGVYNTEYNNEYNTEY 257
Query: 271 NISYKQIN 294
N Y + N
Sbjct: 258 NNEYNEYN 265
>SB_50356| Best HMM Match : PaaX (HMM E-Value=3.6)
Length = 210
Score = 27.5 bits (58), Expect = 3.5
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +1
Query: 100 RNGIKKPRKTRHESTLGHGSKIFK 171
R+GIKK K RH ST G FK
Sbjct: 27 RSGIKKLTKARHGSTQGRLDSFFK 50
>SB_36161| Best HMM Match : SecIII_SopE_N (HMM E-Value=4.1)
Length = 535
Score = 27.5 bits (58), Expect = 3.5
Identities = 12/45 (26%), Positives = 19/45 (42%)
Frame = +1
Query: 40 RIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGHGSKIFKE 174
+ K K K +H N NG+ P+K + + H K F +
Sbjct: 90 KTKFKKIKKEGDHGNNNTEKPNGVSSPKKKKKKHHHKHEEKHFTD 134
>SB_33977| Best HMM Match : CUE (HMM E-Value=0.52)
Length = 1183
Score = 27.5 bits (58), Expect = 3.5
Identities = 9/36 (25%), Positives = 18/36 (50%)
Frame = +2
Query: 35 ENASKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNP 142
E +W +R++ + + KL E + ++GR P
Sbjct: 1031 EKYREWHMKRVLPLFVQDTKLREKIENAEGRTSGGP 1066
>SB_31788| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 352
Score = 27.1 bits (57), Expect = 4.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 37 KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHEST 144
K IK AK N+N RK G K+P++ R ++T
Sbjct: 86 KPIKKAKVSK-VNNNGRRKEKNRGQKRPKRCRPDTT 120
>SB_6986| Best HMM Match : Ribosomal_L29e (HMM E-Value=1.6)
Length = 371
Score = 27.1 bits (57), Expect = 4.6
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +1
Query: 55 KSKNHTNHNQNRKAHRNGIKKPRKTRH-ESTLGHGSKIFKE 174
+S N T HN+N++A ++G + ++ RH ES +KI ++
Sbjct: 216 RSNNVTKHNRNQQA-KDGEPRKKRLRHGESDHAQRAKIIED 255
>SB_51620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 451
Score = 27.1 bits (57), Expect = 4.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 49 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHE 138
+ S +HN + R GIK+PR+++ E
Sbjct: 342 LTTSPTMISHNNQQNDSRRGIKRPRRSQEE 371
>SB_25197| Best HMM Match : TatC (HMM E-Value=1.8)
Length = 622
Score = 27.1 bits (57), Expect = 4.6
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 43 IKMAKSKNHTNHNQNRKAH-RNGIKKPRKTRHESTLGHGSKI 165
I KSK+H NHN+ + H + I K H+ T+ K+
Sbjct: 572 IVYCKSKHHANHNKGCERHFEDDINKCGCRNHDHTIAQYYKL 613
>SB_14572| Best HMM Match : ANF_receptor (HMM E-Value=6.7e-18)
Length = 808
Score = 27.1 bits (57), Expect = 4.6
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -1
Query: 230 PPSRVAWLASGYPSCKT-FDSLKILDPW 150
PP +V L +GY SC T SL LD W
Sbjct: 398 PPRKVMILGAGYSSCSTVVASLTGLDYW 425
>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 26.6 bits (56), Expect = 6.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 219 SRGRLREKLPEKQRPRNE 272
SRGR EK PEKQR +++
Sbjct: 267 SRGRSAEKSPEKQRDKSD 284
>SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +1
Query: 61 KNHTN-HNQNRKAHRNGIKKPRKTRHESTLGHGSKIFKESK 180
+NH HN+NRK N I+K R+ +I S+
Sbjct: 66 RNHKEPHNRNRKEPGNRIRKVEHNRNRKDYSRDERIHNRSR 106
>SB_48996| Best HMM Match : ASC (HMM E-Value=7.1e-08)
Length = 294
Score = 26.2 bits (55), Expect = 8.0
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -2
Query: 91 CGFGYDLYDSLT 56
CGFGY LY S+T
Sbjct: 41 CGFGYQLYKSIT 52
>SB_48994| Best HMM Match : ASC (HMM E-Value=1.3e-11)
Length = 538
Score = 26.2 bits (55), Expect = 8.0
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -2
Query: 91 CGFGYDLYDSLT 56
CGFGY LY S+T
Sbjct: 41 CGFGYQLYKSIT 52
>SB_4982| Best HMM Match : 7tm_1 (HMM E-Value=1.9e-21)
Length = 217
Score = 26.2 bits (55), Expect = 8.0
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = -2
Query: 217 LLG-WLQVTLLAKPLIP*KFWIHGQGWIRAWSSLAF*YHFCELCGFGYDLY 68
L+G W+ L+A P++ G+G I W F +H + LY
Sbjct: 140 LIGIWIAAILVATPMLKFSEVREGEGCIEPWPKSDFPWHLAYFAFVFFSLY 190
>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
Length = 3368
Score = 26.2 bits (55), Expect = 8.0
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Frame = +1
Query: 79 NQNRKAH---RNGIKKPRKTRHESTLGHGSKIFKESKVLQEG*PEASQAT-REGG*EKSY 246
N R+ H +NG KP+ T + TL K+FK SK ++ +A + T RE EK
Sbjct: 2326 NSRRRTHEIDKNG--KPKLTTADFTLVKKKKVFKPSKKKRDPFKDAIEETLREIEEEKRL 2383
Query: 247 PRSKGQEMNISYK 285
K + N K
Sbjct: 2384 QEQKKVKDNEEVK 2396
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,740,874
Number of Sequences: 59808
Number of extensions: 158458
Number of successful extensions: 618
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -