Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_G12
(359 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49148-1|CAA89008.1| 159|Homo sapiens ribosomal protein L29 pro... 61 1e-09
U49083-1|AAC50647.1| 159|Homo sapiens HIP protein. 61 1e-09
U10248-1|AAC50499.1| 159|Homo sapiens ribosomal protein L29 pro... 61 1e-09
BC071909-1|AAH71909.1| 161|Homo sapiens ribosomal protein L29 p... 61 1e-09
BC071663-1|AAH71663.1| 159|Homo sapiens ribosomal protein L29 p... 61 1e-09
BC070481-1|AAH70481.1| 159|Homo sapiens ribosomal protein L29 p... 61 1e-09
BC070190-1|AAH70190.1| 159|Homo sapiens ribosomal protein L29 p... 61 1e-09
BC008926-1|AAH08926.1| 159|Homo sapiens ribosomal protein L29 p... 61 1e-09
AL450405-1|CAI16223.1| 172|Homo sapiens protein ( Human DNA seq... 61 1e-09
BC051789-1|AAH51789.1| 525|Homo sapiens LOC129293 protein protein. 29 5.7
Z15115-1|CAA78821.1| 1031|Homo sapiens DNA topoisomerase II pro... 28 7.6
X68060-1|CAA48197.1| 1621|Homo sapiens DNA topoisomerase II prot... 28 7.6
U54831-1|AAB01982.1| 350|Homo sapiens topoisomerase IIb protein. 28 7.6
BC021863-1|AAH21863.1| 485|Homo sapiens Unknown (protein for IM... 28 7.6
AJ011721-1|CAA09753.1| 717|Homo sapiens topoisomerase II beta p... 28 7.6
AF087160-1|AAC77432.1| 1598|Homo sapiens DNA topoisomerase II be... 28 7.6
AB208879-1|BAD92116.1| 1009|Homo sapiens DNA topoisomerase II, b... 28 7.6
>Z49148-1|CAA89008.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/44 (61%), Positives = 31/44 (70%)
Frame = +1
Query: 49 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGHGSKIFKESK 180
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G K + +
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMR 44
Score = 33.5 bits (73), Expect = 0.20
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +2
Query: 152 MDPKFLRNQRFCKKGNLKPAKQL 220
+DPKFLRN RF KK N K K++
Sbjct: 35 VDPKFLRNMRFAKKHNKKGLKKM 57
>U49083-1|AAC50647.1| 159|Homo sapiens HIP protein.
Length = 159
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/44 (61%), Positives = 31/44 (70%)
Frame = +1
Query: 49 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGHGSKIFKESK 180
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G K + +
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMR 44
Score = 33.5 bits (73), Expect = 0.20
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +2
Query: 152 MDPKFLRNQRFCKKGNLKPAKQL 220
+DPKFLRN RF KK N K K++
Sbjct: 35 VDPKFLRNMRFAKKHNKKGLKKM 57
>U10248-1|AAC50499.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/44 (61%), Positives = 31/44 (70%)
Frame = +1
Query: 49 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGHGSKIFKESK 180
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G K + +
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMR 44
Score = 33.5 bits (73), Expect = 0.20
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +2
Query: 152 MDPKFLRNQRFCKKGNLKPAKQL 220
+DPKFLRN RF KK N K K++
Sbjct: 35 VDPKFLRNMRFAKKHNKKGLKKM 57
>BC071909-1|AAH71909.1| 161|Homo sapiens ribosomal protein L29
protein.
Length = 161
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/44 (61%), Positives = 31/44 (70%)
Frame = +1
Query: 49 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGHGSKIFKESK 180
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G K + +
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMR 44
Score = 33.5 bits (73), Expect = 0.20
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +2
Query: 152 MDPKFLRNQRFCKKGNLKPAKQL 220
+DPKFLRN RF KK N K K++
Sbjct: 35 VDPKFLRNMRFAKKHNKKGLKKM 57
>BC071663-1|AAH71663.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/44 (61%), Positives = 31/44 (70%)
Frame = +1
Query: 49 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGHGSKIFKESK 180
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G K + +
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMR 44
Score = 33.5 bits (73), Expect = 0.20
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +2
Query: 152 MDPKFLRNQRFCKKGNLKPAKQL 220
+DPKFLRN RF KK N K K++
Sbjct: 35 VDPKFLRNMRFAKKHNKKGLKKM 57
>BC070481-1|AAH70481.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/44 (61%), Positives = 31/44 (70%)
Frame = +1
Query: 49 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGHGSKIFKESK 180
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G K + +
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMR 44
Score = 33.5 bits (73), Expect = 0.20
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +2
Query: 152 MDPKFLRNQRFCKKGNLKPAKQL 220
+DPKFLRN RF KK N K K++
Sbjct: 35 VDPKFLRNMRFAKKHNKKGLKKM 57
>BC070190-1|AAH70190.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/44 (61%), Positives = 31/44 (70%)
Frame = +1
Query: 49 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGHGSKIFKESK 180
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G K + +
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMR 44
Score = 33.5 bits (73), Expect = 0.20
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +2
Query: 152 MDPKFLRNQRFCKKGNLKPAKQL 220
+DPKFLRN RF KK N K K++
Sbjct: 35 VDPKFLRNMRFAKKHNKKGLKKM 57
>BC008926-1|AAH08926.1| 159|Homo sapiens ribosomal protein L29
protein.
Length = 159
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/44 (61%), Positives = 31/44 (70%)
Frame = +1
Query: 49 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGHGSKIFKESK 180
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G K + +
Sbjct: 1 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMR 44
Score = 33.5 bits (73), Expect = 0.20
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +2
Query: 152 MDPKFLRNQRFCKKGNLKPAKQL 220
+DPKFLRN RF KK N K K++
Sbjct: 35 VDPKFLRNMRFAKKHNKKGLKKM 57
>AL450405-1|CAI16223.1| 172|Homo sapiens protein ( Human DNA
sequence from clone RP11-632C17 on chromosome 6 Contains
the gene for a novel protein similar to ribosomal
protein L29 ).
Length = 172
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/44 (61%), Positives = 31/44 (70%)
Frame = +1
Query: 49 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGHGSKIFKESK 180
MAKSKNHT HNQ+RK HRNGIKKPR R+ES G K + +
Sbjct: 16 MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMR 59
Score = 33.5 bits (73), Expect = 0.20
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +2
Query: 152 MDPKFLRNQRFCKKGNLKPAKQL 220
+DPKFLRN RF KK N K K++
Sbjct: 50 VDPKFLRNMRFAKKHNKKGLKKM 72
>BC051789-1|AAH51789.1| 525|Homo sapiens LOC129293 protein protein.
Length = 525
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 41 ASKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLAMDPKFLRNQ 178
A W+ +R + ++ LTE+ KS+G P + LA + + LR Q
Sbjct: 226 AGNWERKRPVWVMLMVNSLTEVDIKSRGVPVLDLFLAQEAERLRKQ 271
>Z15115-1|CAA78821.1| 1031|Homo sapiens DNA topoisomerase II protein.
Length = 1031
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 37 KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKT 129
K+ K + S+N ++N RK + KKP+KT
Sbjct: 950 KKRKASGSENEGDYNPGRKTSKTTSKKPKKT 980
>X68060-1|CAA48197.1| 1621|Homo sapiens DNA topoisomerase II protein.
Length = 1621
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 37 KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKT 129
K+ K + S+N ++N RK + KKP+KT
Sbjct: 1540 KKRKASGSENEGDYNPGRKTSKTTSKKPKKT 1570
>U54831-1|AAB01982.1| 350|Homo sapiens topoisomerase IIb protein.
Length = 350
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 37 KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKT 129
K+ K + S+N ++N RK + KKP+KT
Sbjct: 269 KKRKASGSENEGDYNPGRKTSKTTSKKPKKT 299
>BC021863-1|AAH21863.1| 485|Homo sapiens Unknown (protein for
IMAGE:4999541) protein.
Length = 485
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 37 KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKT 129
K+ K + S+N ++N RK + KKP+KT
Sbjct: 404 KKRKASGSENEGDYNPGRKTSKTTSKKPKKT 434
>AJ011721-1|CAA09753.1| 717|Homo sapiens topoisomerase II beta
protein.
Length = 717
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 37 KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKT 129
K+ K + S+N ++N RK + KKP+KT
Sbjct: 636 KKRKASGSENEGDYNPGRKTSKTTSKKPKKT 666
>AF087160-1|AAC77432.1| 1598|Homo sapiens DNA topoisomerase II beta
protein.
Length = 1598
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 37 KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKT 129
K+ K + S+N ++N RK + KKP+KT
Sbjct: 1517 KKRKASGSENEGDYNPGRKTSKTTSKKPKKT 1547
>AB208879-1|BAD92116.1| 1009|Homo sapiens DNA topoisomerase II, beta
isozyme variant protein.
Length = 1009
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 37 KRIKMAKSKNHTNHNQNRKAHRNGIKKPRKT 129
K+ K + S+N ++N RK + KKP+KT
Sbjct: 928 KKRKASGSENEGDYNPGRKTSKTTSKKPKKT 958
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,866,172
Number of Sequences: 237096
Number of extensions: 762241
Number of successful extensions: 2129
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2129
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2190862868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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