Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_G10
(502 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 71 1e-13
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 62 6e-11
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 56 4e-09
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 27 1.6
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 27 1.6
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 27 1.6
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 27 1.6
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 27 2.1
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 25 6.4
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 25 6.4
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe... 25 6.4
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 8.4
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M... 25 8.4
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 25 8.4
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 70.5 bits (165), Expect = 1e-13
Identities = 31/57 (54%), Positives = 44/57 (77%)
Frame = +3
Query: 144 LPLTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVGAAPAAGWSA 314
+ +T +K+ ++ KAA VDVEP W +FAKALEG ++++L+ NIGSG GAAP AG +A
Sbjct: 20 IEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGSGAGAAPVAGGAA 76
Score = 27.1 bits (57), Expect = 1.6
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 388 SDDDMGFGLFD 420
SD+DMGFGLFD
Sbjct: 99 SDEDMGFGLFD 109
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 61.7 bits (143), Expect = 6e-11
Identities = 29/54 (53%), Positives = 41/54 (75%)
Frame = +3
Query: 144 LPLTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVGAAPAAG 305
+ +T +K+ ++ KAA VDVEP W +FAKALEG ++++L+ NIGS AAPAAG
Sbjct: 20 IEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGS-AAAAPAAG 72
Score = 27.1 bits (57), Expect = 1.6
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 388 SDDDMGFGLFD 420
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 55.6 bits (128), Expect = 4e-09
Identities = 25/54 (46%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Frame = +3
Query: 144 LPLTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGS-GVGAAPAA 302
+ +T +K+ ++ KA V+VEP W +FAKALEG ++++L+ NIGS G +AP A
Sbjct: 20 IEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLLNIGSAGAASAPTA 73
Score = 27.1 bits (57), Expect = 1.6
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 388 SDDDMGFGLFD 420
SD+DMGFGLFD
Sbjct: 99 SDEDMGFGLFD 109
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 27.1 bits (57), Expect = 1.6
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 388 SDDDMGFGLFD 420
SD+DMGFGLFD
Sbjct: 302 SDEDMGFGLFD 312
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 1.6
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 388 SDDDMGFGLFD 420
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 1.6
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 388 SDDDMGFGLFD 420
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 1.6
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 388 SDDDMGFGLFD 420
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 26.6 bits (56), Expect = 2.1
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = -1
Query: 265 VIRSRTLMPSKALANRPGQYGSTSTAAAFKMVEIFSPVSGNIIIQ--PG*EQSKHMLIQL 92
+I +P L + G GS + ++ FSP GNI + P E +H+L
Sbjct: 452 LINVSVFIPFGELVHIIGPSGSGKSTFISLLLRYFSPTYGNIYLDDFPLEEIDEHVLGST 511
Query: 91 LTPFLVLNVQVAVGLSSREN 32
+T LV V ++ REN
Sbjct: 512 IT--LVCQQPVIFDMTIREN 529
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 25.0 bits (52), Expect = 6.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 150 LTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 266
L+ E+IS IL + +W AL G+N++D I+
Sbjct: 133 LSSEEISKILNISKYK-SSHWRIFSVSALTGLNIKDAIS 170
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.0 bits (52), Expect = 6.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 132 WMMMLPLTGEKISTILKAAAVDVEPYWPGLFAK 230
W L L+ E++ LKA A+D + + LF+K
Sbjct: 627 WCTKLVLSKEQMPRTLKAIALDPQGNYVSLFSK 659
>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 25.0 bits (52), Expect = 6.4
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Frame = -2
Query: 261 SGHGH*CLPRLWRTDLANMALHLQPPLS---RWWKFSHQLAATSSSSQDESR 115
SGHG P L + + M L+ PL RW K + + AA S SR
Sbjct: 357 SGHGFKFFPILGKYSIGCMFRELEEPLLKKWRWKKENLEFAALDHSRAGPSR 408
>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 315
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 49 GLRQLARSKLKMVSKAELACVYSAL 123
G+ QL + ++SKA+L C Y L
Sbjct: 159 GMLQLDMPHVNILSKADLLCTYGTL 183
>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 757
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 258 GHGH*CLPRLWRTDL 214
G+G CLP LWR D+
Sbjct: 402 GNGVQCLPLLWRQDI 416
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 24.6 bits (51), Expect = 8.4
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -3
Query: 125 MRAE*THANSAFDTIFS-FERASCRRP*LKREQARLSSDXQR 3
+R + H TI + ER SCRRP L + RL+ +R
Sbjct: 213 LRHQVMHCQPHLRTIVNAVERMSCRRPKLVPQATRLTEVLER 254
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,708,256
Number of Sequences: 5004
Number of extensions: 28414
Number of successful extensions: 81
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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