Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_G10
         (502 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89...    74   7e-14
11_01_0483 - 3718104-3718802,3718817-3719308                           31   0.52 
05_03_0415 - 13661745-13664240,13664376-13664401,13665018-136650...    29   1.6  
04_01_0596 - 7852529-7855185,7855545-7855581                           29   1.6  
07_01_0358 - 2631214-2632992                                           29   2.1  
10_08_0552 - 18714062-18714191,18714288-18714565,18714921-187149...    28   4.8  
12_02_0821 + 23443733-23444425                                         27   8.5  
04_04_0935 - 29509135-29511732                                         27   8.5  
03_04_0205 - 18485933-18488446                                         27   8.5  

>08_01_0113 +
           897970-898038,898148-898271,898811-898896,898996-899049
          Length = 110

 Score = 73.7 bits (173), Expect = 7e-14
 Identities = 34/57 (59%), Positives = 44/57 (77%)
 Frame = +3

Query: 144 LPLTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVGAAPAAGWSA 314
           +P+T EKI+T++KAA + VE YWPGLFAK LE  +V DLI ++GSG GAAP A  +A
Sbjct: 20  IPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLILSVGSGGGAAPVAAAAA 76


>11_01_0483 - 3718104-3718802,3718817-3719308
          Length = 396

 Score = 31.1 bits (67), Expect = 0.52
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 45  LRPTATCTFKTKNGVKS*ISMCLLCSHPGWMMMLP 149
           LRP AT T    +GV    +      +PGW+M++P
Sbjct: 4   LRPVATATATLPSGVPPPAAAAAARGYPGWVMLMP 38


>05_03_0415 - 13661745-13664240,13664376-13664401,13665018-13665035,
            13665914-13666181,13666531-13666598,13667102-13667243
          Length = 1005

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 110  FTLLSSWLDDDVAANW*ENFHHLESGGCRC 199
            FT +S  +D ++       FHH ++G C C
Sbjct: 972  FTYISKIVDHEIVVRDPSRFHHFKNGSCSC 1001


>04_01_0596 - 7852529-7855185,7855545-7855581
          Length = 897

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 110 FTLLSSWLDDDVAANW*ENFHHLESGGCRC 199
           FT +S  +D ++       FHH ++G C C
Sbjct: 864 FTYISKIVDHEIVVRDPSRFHHFKNGSCSC 893


>07_01_0358 - 2631214-2632992
          Length = 592

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +2

Query: 104 HV-FTLLSSWLDDDVAANW*ENFHHLESGGCRCR 202
           HV F L+S   D ++       FHH + G C C+
Sbjct: 556 HVAFNLISKVYDREIIVRDRSRFHHFQGGACSCK 589


>10_08_0552 -
           18714062-18714191,18714288-18714565,18714921-18714968,
           18715222-18715308,18715522-18715634,18717140-18717349,
           18717368-18717434
          Length = 310

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
 Frame = +2

Query: 95  LN*HVFTLLSSWLDDDVAANW*ENFHHLE---SGGCRCRAILARSVRQSLGRHQCP*PDH 265
           L+ H    + + LDD    +W  NF HL    + GC       R    + G H      H
Sbjct: 104 LDEHPQRRMQAVLDDPCHGSWRSNFPHLAVTLTCGCLVSGNAVRGFGGNHGVHSACVYYH 163

Query: 266 QHRLWSGCCSG 298
           ++R W  C  G
Sbjct: 164 KYRNWPFCLWG 174


>12_02_0821 + 23443733-23444425
          Length = 230

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 114 LCSHPGWMMMLPLTGEKIS 170
           LC HP W ++ P +G+ IS
Sbjct: 34  LCPHPVWPLVTPTSGQPIS 52


>04_04_0935 - 29509135-29511732
          Length = 865

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 107 VFTLLSSWLDDDVAANW*ENFHHLESGGCRC 199
           V  L+SS  D +        FHH +SG C C
Sbjct: 831 VIKLISSVTDREFVIRDGVRFHHFKSGSCSC 861


>03_04_0205 - 18485933-18488446
          Length = 837

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 110 FTLLSSWLDDDVAANW*ENFHHLESGGCRC 199
           FT++S  +  ++       FHH E G C C
Sbjct: 804 FTVISKIVKREIIVRDINRFHHFEDGKCSC 833


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,853,224
Number of Sequences: 37544
Number of extensions: 227469
Number of successful extensions: 628
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)