Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_G09
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10... 121 1e-28
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a... 118 7e-28
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 29 0.78
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 27 3.1
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch... 27 3.1
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 27 3.1
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 26 4.2
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 25 7.3
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c... 25 7.3
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb... 25 9.6
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 25 9.6
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 25 9.6
>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 121 bits (291), Expect = 1e-28
Identities = 56/83 (67%), Positives = 67/83 (80%)
Frame = +2
Query: 410 RFPXLLGPGLNKAGKFPGLLSHQESMTHKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 589
+ P LLGPGL+KAGKFP +SH + + KI EVK TIKFQ+KKVLCL VAVGHVDM ++
Sbjct: 118 QIPRLLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVLCLGVAVGHVDMAEEQ 177
Query: 590 LAQNVHLSINFLVSLLKKHWQNV 658
LA N+ L+INFLVSLLKK WQN+
Sbjct: 178 LAANLSLAINFLVSLLKKGWQNI 200
Score = 111 bits (267), Expect = 9e-26
Identities = 56/114 (49%), Positives = 66/114 (57%)
Frame = +1
Query: 88 SCVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQ 267
S V +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL +PRP M +C+LGD
Sbjct: 11 SSVETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPNMSICILGDA 70
Query: 268 QHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 429
D AK V M SE LIKQIPR +G
Sbjct: 71 HDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPRLLG 124
>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 216
Score = 118 bits (284), Expect = 7e-28
Identities = 53/83 (63%), Positives = 67/83 (80%)
Frame = +2
Query: 410 RFPXLLGPGLNKAGKFPGLLSHQESMTHKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 589
+ P LLGPGL+KAGKFP +SH + + KI EVK TIKFQ+KKVLCL VAVGHV+M+ ++
Sbjct: 118 QIPRLLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLKKVLCLGVAVGHVEMSEEQ 177
Query: 590 LAQNVHLSINFLVSLLKKHWQNV 658
L N+ L++NFLVSLLKK WQN+
Sbjct: 178 LIANIMLAVNFLVSLLKKGWQNI 200
Score = 110 bits (265), Expect = 1e-25
Identities = 58/122 (47%), Positives = 68/122 (55%)
Frame = +1
Query: 64 KCLVTRSTSCVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKM 243
K V S V +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL +PRP M
Sbjct: 3 KVSVASVRSNVEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPNM 62
Query: 244 QVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRF 423
+C+LGD D AK V M SE LIKQIPR
Sbjct: 63 AICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPRL 122
Query: 424 VG 429
+G
Sbjct: 123 LG 124
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 28.7 bits (61), Expect = 0.78
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 82 STSCVNAVLQSSKDKKRNFLETVELQIGLKNYD-PQKDKRFSG 207
S+ C N +++SS K NF +TV + +YD P+ D + G
Sbjct: 936 SSLCDNVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Frame = +2
Query: 488 THKIDEVKGTIKFQMKK----VLCLSVAVGHVDMTPDEL----AQNVHLSINFLVSLLKK 643
T +I+ GT+ V LS+A+G+++ P L N H+S+ L L+K
Sbjct: 2682 TERINNTDGTVVSSHNPFVFFVNVLSMAIGNINDAPVRLNALLMDNAHVSLRRLFELVKN 2741
Query: 644 HW 649
H+
Sbjct: 2742 HY 2743
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/34 (29%), Positives = 15/34 (44%)
Frame = +1
Query: 529 NEEGVVSFCSSWPCGHDS**ACSECASFHQLPCV 630
NE C W C D C++C ++ + CV
Sbjct: 257 NEPSNCKVCKKW-CAFDFSVQCADCKKYYHMDCV 289
>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 701
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 574 HDS**ACSECASFHQLPCVTAQETLAEC 657
H S + S ++HQL CV Q+ L+EC
Sbjct: 52 HPSINSLSSFQTYHQLLCVLEQKHLSEC 79
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/49 (26%), Positives = 20/49 (40%)
Frame = +2
Query: 479 ESMTHKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFL 625
E + ++ G F + GHV T ELA+NV + F+
Sbjct: 176 EQLKREVVSAYGATYFNSAPCSSFMIKCGHVSNTSTELAENVESILQFV 224
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +1
Query: 82 STSCVNAVLQSSKDKKRNFLETV 150
STS +NA+L+ SK+KK N +E++
Sbjct: 367 STS-INALLERSKEKKANVIESL 388
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.4 bits (53), Expect = 7.3
Identities = 7/27 (25%), Positives = 19/27 (70%)
Frame = -1
Query: 601 ILSKLIRSHVHMANCYRKTQHLLHLEL 521
+L K++ + ++C+++ +HL+H+ L
Sbjct: 1047 VLMKVVGVFANYSDCFQRNRHLVHMVL 1073
>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
2|||Manual
Length = 812
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -2
Query: 369 FGQFLDKLFVLIQFFQSLSIHTWHIQGFSLVTML 268
+G+F+ +LF LIQ + + W + + VT++
Sbjct: 385 YGEFVMRLFFLIQKLRKKYLSRWGVLDAAFVTVI 418
>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 648 QCFLSSDTRKLMERCTF*ASSSGVMSTWPTATERHNT 538
+CF SD +KL +RC SS WP + ++T
Sbjct: 143 KCFHRSDVQKLSKRCDILFSSE-----WPEDVQENST 174
>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1369
Score = 25.0 bits (52), Expect = 9.6
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = -2
Query: 204 GETLVLLWVIVLQTNLKLYSLQKVTFLVLRGLKN 103
G L LW IV+ T L + F VLR L N
Sbjct: 1184 GSKLTKLWKIVVMTVSFLVGAWLIIFYVLRKLSN 1217
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 25.0 bits (52), Expect = 9.6
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -1
Query: 283 PRHNAAGLQERKLAFSAAVCILALQCRRNACPSVGHSSSDQFEAL 149
P H A LQE A AA+ L+ ++NA G +S D +AL
Sbjct: 317 PEHELAALQEHNEAHDAAMRQYELERQQNAM-LPGLASIDGLQAL 360
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,716,581
Number of Sequences: 5004
Number of extensions: 53817
Number of successful extensions: 178
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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