Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_G09
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6677| Best HMM Match : Ribosomal_L1 (HMM E-Value=0.4)               66   2e-11
SB_41172| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-21)                 31   1.1  
SB_50940| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_11654| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_58594| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_52896| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0023)          28   5.8  
SB_32724| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0029)          28   5.8  
SB_22943| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_21551| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0016)          28   5.8  
SB_16136| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0025)          28   5.8  
SB_5165| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.8  
SB_4717| Best HMM Match : Exo_endo_phos (HMM E-Value=0.49)             28   5.8  
SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)               28   7.7  
SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_6677| Best HMM Match : Ribosomal_L1 (HMM E-Value=0.4)
          Length = 81

 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 27/44 (61%), Positives = 36/44 (81%)
 Frame = +2

Query: 410 RFPXLLGPGLNKAGKFPGLLSHQESMTHKIDEVKGTIKFQMKKV 541
           + P +LGPGLNKAGKFP  ++H E+M  KI++V+ TIKFQMKK+
Sbjct: 34  QIPRILGPGLNKAGKFPTPINHNENMVQKIEDVRSTIKFQMKKI 77


>SB_41172| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-21)
          Length = 342

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
 Frame = -2

Query: 327 FQSLSIHTWHIQGFSLVTMLLVSKNA----NLHFRPRYVF*LYSAGETLVLLWVIVLQTN 160
           + S  + TW +   S +T+  +S        LH R + +F +  A   L+++W+I L  N
Sbjct: 100 YMSFELSTWLLLMSSFLTLTAISCERFAALTLHLRYQQMFTMKRAAMALIMIWLISLSLN 159

Query: 159 -LKLYSLQKVTFLV 121
            ++L  L+ + + +
Sbjct: 160 VIRLLLLESLFWCI 173


>SB_50940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 531

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 635 AVTQGS*WKDAHSEQAHQESCPH 567
           AV+    WK  H+ Q  QESCPH
Sbjct: 103 AVSNPCFWKWIHAHQTAQESCPH 125


>SB_11654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1161

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = -2

Query: 303 WHIQGFSLVTMLLVSKNANLHFRPRYVF*LYSAGETLVLLWVIVLQTNLKLYSLQKVTFL 124
           W I    LV  L+ + N +   R ++VF +    E L+ +W +  +T L    +Q   F+
Sbjct: 296 WFIWTAVLVDALIQANNGSWRRRAQFVFTILFDIEALIKIWCVGFRTYLNSSRMQFFEFI 355

Query: 123 V 121
           +
Sbjct: 356 L 356


>SB_3044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/61 (31%), Positives = 31/61 (50%)
 Frame = +2

Query: 464 LLSHQESMTHKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFLVSLLKK 643
           L+  ++    +++ +K  +    KKV   S AV  +  TPD ++  V   +N L SL KK
Sbjct: 629 LIGLKDGGDKELNRLKEELTQVSKKV---SSAVSEMSDTPDNVSNQVEKVVNELKSLKKK 685

Query: 644 H 646
           H
Sbjct: 686 H 686


>SB_58594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1001

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +2

Query: 458 PGLL-SHQESMTHKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPD 586
           P L+ S+  S+ HKIDE++  +     +++C++ +  H D+ PD
Sbjct: 744 PSLVYSNIRSIQHKIDELQTVVNLNRPQIVCITESWLHPDI-PD 786


>SB_52896| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0023)
          Length = 393

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +2

Query: 458 PGLL-SHQESMTHKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPD 586
           P L+ S+  S+ HKIDE++  +     +++C++ +  H D+ PD
Sbjct: 46  PSLVYSNIRSIQHKIDELQTVVNLNRPQIVCITESWLHPDI-PD 88


>SB_32724| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0029)
          Length = 302

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +2

Query: 458 PGLL-SHQESMTHKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPD 586
           P L+ S+  S+ HKIDE++  +     +++C++ +  H D+ PD
Sbjct: 12  PSLVYSNIRSIQHKIDELQTVVNLNRPQIVCITESWLHPDI-PD 54


>SB_22943| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 816

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +2

Query: 458 PGLL-SHQESMTHKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPD 586
           P L+ S+  S+ HKIDE++  +     +++C++ +  H D+ PD
Sbjct: 121 PSLVYSNIRSIQHKIDELQTVVNLNRPQIVCITESWLHPDI-PD 163


>SB_21551| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0016)
          Length = 999

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +2

Query: 458 PGLL-SHQESMTHKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPD 586
           P L+ S+  S+ HKIDE++  +     +++C++ +  H D+ PD
Sbjct: 325 PSLVYSNIRSIQHKIDELQTVVNLNRPQIVCITESWLHPDI-PD 367


>SB_16136| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0025)
          Length = 731

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +2

Query: 458 PGLL-SHQESMTHKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPD 586
           P L+ S+  S+ HKIDE++  +     +++C++ +  H D+ PD
Sbjct: 395 PSLVYSNIRSIQHKIDELQTVVNLNRPQIVCITESWLHPDI-PD 437


>SB_5165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -1

Query: 595 SKLIRSHVHMANCYRKTQHLLHLELNGSLDFINLVR-HGL-LVGEKTREFTS 446
           +K I   +H+ + YR   H++HL    +LD I   R  G+ L  E T  + S
Sbjct: 169 NKAIEMVIHLCDHYRVPCHIVHLSSGSALDSIRSARSSGIPLTVETTHHYLS 220


>SB_4717| Best HMM Match : Exo_endo_phos (HMM E-Value=0.49)
          Length = 439

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +2

Query: 458 PGLL-SHQESMTHKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPD 586
           P L+ S+  S+ HKIDE++  +     +++C++ +  H D+ PD
Sbjct: 129 PSLVYSNIRSIQHKIDELQTVVNLNRPQIVCITESWLHPDI-PD 171


>SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)
          Length = 1243

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = +1

Query: 154 LQIGLKNYDPQKDKRFSGTVKLKYIPRPKM-QVC---VLGDQQHC 276
           LQ G K YDP K+K      K KY+  PK+ + C   ++  +QHC
Sbjct: 336 LQCGKKFYDPLKEK----CAKNKYVYNPKIYKYCYGRIIPVKQHC 376


>SB_11653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1867

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = -2

Query: 303 WHIQGFSLVTMLLVSKNANLHFRPRYVF*LYSAGETLVLLWVIVLQTNLKLYSLQKVTFL 124
           W I    LV  L+ + N +   + ++VF +    E L+ +W +  +T L    +Q   F+
Sbjct: 395 WFIWFAVLVDALIQANNGSWRRQAQFVFTILFDIEALIKIWCVGFRTYLNSSRMQFFEFI 454

Query: 123 VLRG 112
           +  G
Sbjct: 455 LAVG 458


>SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1402

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
 Frame = +1

Query: 154 LQIGLKNYDPQKDKRFSGTVKLKYIPRPKM-QVC---VLGDQQHC 276
           LQ G K YDP K+K      K KY+  PK+ + C   ++  +QHC
Sbjct: 336 LQCGKKFYDPLKEK----CAKNKYVYNPKIYKYCYGRIIPVKQHC 376


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,792,215
Number of Sequences: 59808
Number of extensions: 418321
Number of successful extensions: 981
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)