Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_G09
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal...   129   2e-30
AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal pro...   129   2e-30
AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal pro...   129   2e-30
AF099915-5|AAC68770.1|  118|Caenorhabditis elegans Hypothetical ...    29   2.9  
AF067949-5|AAC19234.1|  109|Caenorhabditis elegans Synaptobrevin...    28   6.7  
AF003282-1|AAB61235.1|  109|Caenorhabditis elegans SNB-1 protein.      28   6.7  
AF003281-1|AAB61234.1|  109|Caenorhabditis elegans SNB-1 protein.      28   6.7  

>AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal
           protein L10A protein.
          Length = 186

 Score =  129 bits (311), Expect = 2e-30
 Identities = 57/83 (68%), Positives = 70/83 (84%)
 Frame = +2

Query: 410 RFPXLLGPGLNKAGKFPGLLSHQESMTHKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 589
           + P +LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLSVAVGHV +T +E
Sbjct: 88  QIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEE 147

Query: 590 LAQNVHLSINFLVSLLKKHWQNV 658
           L  N+ LSINFLVSLLKK+WQNV
Sbjct: 148 LVSNISLSINFLVSLLKKNWQNV 170



 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 43/87 (49%), Positives = 51/87 (58%)
 Frame = +1

Query: 169 KNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXX 348
           KNYDPQKDKRFSG+++LK+IPRP M+VCV GDQ H DEA   ++P M             
Sbjct: 8   KNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKK 67

Query: 349 XXXXXXXXXXXXXXSESLIKQIPRFVG 429
                         SESLIKQIPR +G
Sbjct: 68  LIKKLAKSYDAFIASESLIKQIPRILG 94


>AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform b protein.
          Length = 155

 Score =  129 bits (311), Expect = 2e-30
 Identities = 57/83 (68%), Positives = 70/83 (84%)
 Frame = +2

Query: 410 RFPXLLGPGLNKAGKFPGLLSHQESMTHKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 589
           + P +LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLSVAVGHV +T +E
Sbjct: 57  QIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEE 116

Query: 590 LAQNVHLSINFLVSLLKKHWQNV 658
           L  N+ LSINFLVSLLKK+WQNV
Sbjct: 117 LVSNISLSINFLVSLLKKNWQNV 139



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 24/63 (38%), Positives = 28/63 (44%)
 Frame = +1

Query: 241 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 420
           M+VCV GDQ H DEA   ++P M                           SESLIKQIPR
Sbjct: 1   MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 60

Query: 421 FVG 429
            +G
Sbjct: 61  ILG 63


>AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform a protein.
          Length = 216

 Score =  129 bits (311), Expect = 2e-30
 Identities = 57/83 (68%), Positives = 70/83 (84%)
 Frame = +2

Query: 410 RFPXLLGPGLNKAGKFPGLLSHQESMTHKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 589
           + P +LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLSVAVGHV +T +E
Sbjct: 118 QIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEE 177

Query: 590 LAQNVHLSINFLVSLLKKHWQNV 658
           L  N+ LSINFLVSLLKK+WQNV
Sbjct: 178 LVSNISLSINFLVSLLKKNWQNV 200



 Score =  117 bits (281), Expect = 8e-27
 Identities = 57/109 (52%), Positives = 68/109 (62%)
 Frame = +1

Query: 103 VLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDE 282
           VL+ S +K R F ET+ELQIGLKNYDPQKDKRFSG+++LK+IPRP M+VCV GDQ H DE
Sbjct: 16  VLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDE 75

Query: 283 AKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 429
           A   ++P M                           SESLIKQIPR +G
Sbjct: 76  AAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPRILG 124


>AF099915-5|AAC68770.1|  118|Caenorhabditis elegans Hypothetical
           protein E02H9.4 protein.
          Length = 118

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 118 KDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYI 228
           K +K N  E VEL   +KNY P+ + R    V+ KY+
Sbjct: 41  KGEKYNGNEKVELTTTVKNYKPKNNTRKWPAVEAKYL 77


>AF067949-5|AAC19234.1|  109|Caenorhabditis elegans Synaptobrevin
           related protein 1 protein.
          Length = 109

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/72 (25%), Positives = 33/72 (45%)
 Frame = +2

Query: 434 GLNKAGKFPGLLSHQESMTHKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLS 613
           G ++ G  P     Q++   ++DEV G +K  ++KVL     +  +D   D L +     
Sbjct: 11  GGSQGGPRPSNKRLQQTQA-QVDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69

Query: 614 INFLVSLLKKHW 649
                +L +K+W
Sbjct: 70  EKSAATLKRKYW 81


>AF003282-1|AAB61235.1|  109|Caenorhabditis elegans SNB-1 protein.
          Length = 109

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/72 (25%), Positives = 33/72 (45%)
 Frame = +2

Query: 434 GLNKAGKFPGLLSHQESMTHKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLS 613
           G ++ G  P     Q++   ++DEV G +K  ++KVL     +  +D   D L +     
Sbjct: 11  GGSQGGPRPSNKRLQQTQA-QVDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69

Query: 614 INFLVSLLKKHW 649
                +L +K+W
Sbjct: 70  EKSAATLKRKYW 81


>AF003281-1|AAB61234.1|  109|Caenorhabditis elegans SNB-1 protein.
          Length = 109

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/72 (25%), Positives = 33/72 (45%)
 Frame = +2

Query: 434 GLNKAGKFPGLLSHQESMTHKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLS 613
           G ++ G  P     Q++   ++DEV G +K  ++KVL     +  +D   D L +     
Sbjct: 11  GGSQGGPRPSNKRLQQTQA-QVDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQF 69

Query: 614 INFLVSLLKKHW 649
                +L +K+W
Sbjct: 70  EKSAATLKRKYW 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,321,179
Number of Sequences: 27780
Number of extensions: 318638
Number of successful extensions: 761
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)