Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_G08
(647 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 131 1e-31
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 77 2e-15
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 62 7e-11
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 60 4e-10
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 48 1e-06
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 42 6e-05
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 40 4e-04
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 38 0.001
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 38 0.002
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c... 37 0.003
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 36 0.007
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 35 0.012
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p... 31 0.14
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 27 2.3
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb... 27 3.1
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 26 5.4
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 25 7.1
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo... 25 9.4
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 131 bits (316), Expect = 1e-31
Identities = 72/130 (55%), Positives = 85/130 (65%), Gaps = 1/130 (0%)
Frame = +1
Query: 259 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQG 435
F DF+ GG+SAAVSKTA APIERVKLL+Q Q + + RYKGI + F R E+G
Sbjct: 27 FFFDFMMGGVSAAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEG 86
Query: 436 LLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGRVLTRRRSSGVTSLVIWPPGGAAGA 615
++S WRGN ANV+RYFPTQALNFAFKDK+K++F R GGAAGA
Sbjct: 87 VISLWRGNTANVLRYFPTQALNFAFKDKFKKMF--GYKKERDGYAKWFAGNLASGGAAGA 144
Query: 616 TSLCFVYPLD 645
SL FVY LD
Sbjct: 145 ASLLFVYSLD 154
Score = 37.9 bits (84), Expect = 0.001
Identities = 23/93 (24%), Positives = 42/93 (45%)
Frame = +1
Query: 259 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 438
FA + +GG + A S V ++ + L S + ++++ G+VD + + + GL
Sbjct: 132 FAGNLASGGAAGAASLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTYRSDGL 191
Query: 439 LSFWRGNFANVIRYFPTQALNFAFKDKYKQVFL 537
+RG +V+ + L F D K V L
Sbjct: 192 RGLYRGFGPSVVGIVVYRGLYFGMYDTLKPVVL 224
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 77.0 bits (181), Expect = 2e-15
Identities = 46/124 (37%), Positives = 68/124 (54%)
Frame = +1
Query: 274 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 453
L+GG++A VS+TAV+P+ER+K++ QVQ+ ++ Y + V+I +GL+ F+R
Sbjct: 25 LSGGVAATVSRTAVSPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFR 77
Query: 454 GNFANVIRYFPTQALNFAFKDKYKQVFLGRVLTRRRSSGVTSLVIWPPGGAAGATSLCFV 633
GN N +R FP A+ FA + KQ R L R + + G AGA S
Sbjct: 78 GNGTNCLRAFPYGAVQFATFNMLKQ----RALKNRSHQNLENHERLLFGAIAGAASCATT 133
Query: 634 YPLD 645
YPLD
Sbjct: 134 YPLD 137
Score = 43.6 bits (98), Expect = 3e-05
Identities = 26/92 (28%), Positives = 44/92 (47%)
Frame = +1
Query: 229 KMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDA 408
K + AD AF K FL GG + + +T P + ++ QV + YK I A
Sbjct: 217 KFFSNADLTAFQKLFL-GGFTGIIGQTLTFPADVLRRRFQVNRIP---GIGHNYKNIKSA 272
Query: 409 FVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 504
I K +G+ F+RG +N+++ P ++ +
Sbjct: 273 IFHIYKTEGINGFFRGYSSNMLKIIPVMSITW 304
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 62.1 bits (144), Expect = 7e-11
Identities = 45/127 (35%), Positives = 64/127 (50%)
Frame = +1
Query: 265 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLS 444
K +AGG + V+K+ VAP++RVK+L Q H S + A R+ G+ A I GL
Sbjct: 19 KSGIAGGTAGCVAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHIYHVYGLHG 77
Query: 445 FWRGNFANVIRYFPTQALNFAFKDKYKQVFLGRVLTRRRSSGVTSLVIWPPGGAAGATSL 624
++G+ A + R FP + F Y+QV RVL R T + G AG S+
Sbjct: 78 LYQGHTATLYRVFPYAGIKFV---AYEQV--RRVLI-RDPEHETHARRFLSGSLAGTCSV 131
Query: 625 CFVYPLD 645
F YPL+
Sbjct: 132 FFTYPLE 138
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 59.7 bits (138), Expect = 4e-10
Identities = 37/133 (27%), Positives = 67/133 (50%)
Frame = +1
Query: 247 DPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPK 426
DP F++GGI+ VS+T AP++R+K++L + + + + ++ +
Sbjct: 123 DPKNNVGYFISGGIAGIVSRTCTAPLDRLKVML-ISDTGSKPSPKYPFATLLHTTKVLWN 181
Query: 427 EQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGRVLTRRRSSGVTSLVIWPPGGA 606
G+ SF+ GN NV++ P ++ F + K+V LG S + L + GG
Sbjct: 182 RNGIRSFFVGNGINVLKVMPESSIKFGTYEAMKRV-LG---ISSSSENHSPLYSYLAGGM 237
Query: 607 AGATSLCFVYPLD 645
AG+ + F+YP+D
Sbjct: 238 AGSVAQMFIYPVD 250
Score = 42.7 bits (96), Expect = 4e-05
Identities = 28/130 (21%), Positives = 66/130 (50%), Gaps = 5/130 (3%)
Frame = +1
Query: 271 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVR-IPKEQGLLSF 447
+LAGG++ +V++ + P++ +K +Q +S+ Q K I+ + + + K G+ +
Sbjct: 232 YLAGGMAGSVAQMFIYPVDTLKFRIQCSDLSR----GQHGKSIILSNAKELYKSVGIRGY 287
Query: 448 WRGNFANVIRYFPTQALNFAFKDKYKQVFLGRVLTR----RRSSGVTSLVIWPPGGAAGA 615
+RG ++ FP A + + K+ ++G + +R + + + ++ G +G+
Sbjct: 288 YRGVLVGILGMFPYSATDLGTFEGLKRTWIGILASRDNVDPQDVKLPNGLVMAFGALSGS 347
Query: 616 TSLCFVYPLD 645
T V+PL+
Sbjct: 348 TGATIVFPLN 357
Score = 41.9 bits (94), Expect = 8e-05
Identities = 21/83 (25%), Positives = 40/83 (48%)
Frame = +1
Query: 280 GGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGN 459
G +S + T V P+ ++ LQ Q S A Y G +D F + K +G ++G
Sbjct: 342 GALSGSTGATIVFPLNVIRTRLQTQGTSAHPAT---YDGFIDCFYKTTKNEGFRGLYKGL 398
Query: 460 FANVIRYFPTQALNFAFKDKYKQ 528
N+++ P+ A+++ + K+
Sbjct: 399 SPNLLKVAPSVAISYLVYENCKK 421
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 48.0 bits (109), Expect = 1e-06
Identities = 37/133 (27%), Positives = 59/133 (44%)
Frame = +1
Query: 247 DPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPK 426
D + F F AG ++ + P++ VK +Q+ V K Y G D +I K
Sbjct: 4 DNIPFPVTFAAGAVAGISEVLTLYPLDVVKTRMQLS-VGKS-----DYNGTFDCLKKIVK 57
Query: 427 EQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGRVLTRRRSSGVTSLVIWPPGGA 606
+G +RG ++ P +AL FA D Y +++ +V R+ SS S++ G
Sbjct: 58 NEGPHRLYRGILPPILMEAPKRALKFASNDTYSKLW-RKVFKRKDSSPALSIL---TGSC 113
Query: 607 AGATSLCFVYPLD 645
AG T V P +
Sbjct: 114 AGFTETFVVVPFE 126
Score = 34.3 bits (75), Expect = 0.015
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Frame = +1
Query: 262 AKDFLAGGISAAVSKTAVAPIERVKLLLQ-VQHVSKQIAADQRYKGIVDAFVRIPKEQGL 438
A L G + V P E +K+ LQ V++ SK Y G VD F +I K++ +
Sbjct: 105 ALSILTGSCAGFTETFVVVPFELMKIRLQDVKNASK-------YNGTVDCFTKIVKQERI 157
Query: 439 LSFWRGNFANVIRYFPTQALNFAFKDKYK 525
L+ + G A + R+ A F K +
Sbjct: 158 LALYNGFEATMWRHVVWNAGYFGVIQKIR 186
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 42.3 bits (95), Expect = 6e-05
Identities = 24/88 (27%), Positives = 48/88 (54%)
Frame = +1
Query: 274 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 453
++GG+S A++ + P++ VK LLQ + S I ++ KG +D I G+ SF++
Sbjct: 209 ISGGLSGAIASSLTTPLDVVKTLLQTRG-SSSIPEVRKCKGSLDVVRFIYNYGGIPSFFK 267
Query: 454 GNFANVIRYFPTQALNFAFKDKYKQVFL 537
G ++ P A+++A + K++ +
Sbjct: 268 GIRPRMVVAMPATAVSWAAYEAGKEILI 295
Score = 39.5 bits (88), Expect = 4e-04
Identities = 21/85 (24%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +1
Query: 274 LAGGISAAVSKTAVAPIERVKLLLQVQH-VSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 450
LAG S + + + P++ +K +Q+ + VS+ ++ + IV++ ++I +G+ S W
Sbjct: 24 LAGAFSGILEHSVMYPVDAIKTRMQMLNGVSRSVSGN-----IVNSVIKISSTEGVYSLW 78
Query: 451 RGNFANVIRYFPTQALNFAFKDKYK 525
RG + ++ P+ A+ F+ + +K
Sbjct: 79 RGISSVIMGAGPSHAIYFSVLEFFK 103
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 39.5 bits (88), Expect = 4e-04
Identities = 34/133 (25%), Positives = 53/133 (39%), Gaps = 1/133 (0%)
Frame = +1
Query: 250 PVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKE 429
PV + +++G IS + V P+E V++ LQ+Q K + Y G D +I +
Sbjct: 109 PVTMPQYYVSGAISGLANSFLVGPVEHVRIRLQIQ-TGKNVL----YHGPWDCIKKISSQ 163
Query: 430 QGLLSFWRGNFANVIRYFPTQALNF-AFKDKYKQVFLGRVLTRRRSSGVTSLVIWPPGGA 606
GL +G R + F A++ K LT R + L ++ G
Sbjct: 164 YGLSGIMKGYNPTAAREAHGLGMYFLAYEALVKNTMAKHHLTDRSQTPGWKLCVF--GAG 221
Query: 607 AGATSLCFVYPLD 645
AG YP D
Sbjct: 222 AGYAMWLAAYPFD 234
Score = 37.9 bits (84), Expect = 0.001
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +1
Query: 256 AFAKDFLAGGISAAVSKTAVA-PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQ 432
+F KDFLA G+S V++ V P + VK+ LQ Q I Y +D +I K +
Sbjct: 16 SFTKDFLA-GVSGGVAQVLVGQPFDCVKVRLQSQSNVSPI-----YNNALDCVKKISKNE 69
Query: 433 GLLSFWRG 456
GL +F++G
Sbjct: 70 GLAAFYKG 77
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 37.9 bits (84), Expect = 0.001
Identities = 21/87 (24%), Positives = 39/87 (44%)
Frame = +1
Query: 271 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 450
FL G ++ ++ PI+ VK +Q ++A + YK + +I + GLL FW
Sbjct: 207 FLVGSVAGIITVYCTQPIDTVKSRMQ------SLSASKEYKNSIHCAYKILTQDGLLRFW 260
Query: 451 RGNFANVIRYFPTQALNFAFKDKYKQV 531
G + R + + F +K ++
Sbjct: 261 SGATPRLARLILSGGIVFTVYEKVMEI 287
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 37.5 bits (83), Expect = 0.002
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Frame = +1
Query: 265 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQR---YKGIVDAFVRIPKEQG 435
KD +AGG + S VAP++ VK Q Q + G + + I +G
Sbjct: 7 KDAIAGGAAGLASSLVVAPLDVVKTRKQAQKAFYSTGGGKNTMVLGGTLSSMRTIFHNEG 66
Query: 436 LLSFWRGNFANVIRYFPTQALNFAFKDKYKQVF 534
+ +RG ++ Y P+ ++ F +K K +F
Sbjct: 67 IAGLYRGVGPMMLGYLPSWSIYFVVYEKCKVLF 99
Score = 28.7 bits (61), Expect = 0.76
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 373 AADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 471
A Y DAF +I K +GL +F+RG F ++
Sbjct: 225 ACSPAYNNTFDAFRKIYKYEGLAAFYRGLFPSL 257
>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +1
Query: 271 FLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSF 447
FL+GG++A + T P E +K Q+Q ++K + + YK + AF I + +G+
Sbjct: 27 FLSGGLAACGAVTLTNPFEVIKTRFQLQGQLTKLDPSKRIYKSVGQAFSLIARHEGIRGL 86
Query: 448 WRG 456
RG
Sbjct: 87 QRG 89
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 35.5 bits (78), Expect = 0.007
Identities = 22/86 (25%), Positives = 39/86 (45%)
Frame = +1
Query: 274 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 453
LAGGIS+ + + +AP + +K+ +Q+ S + F +++G+ + WR
Sbjct: 21 LAGGISSVICRFMIAPFDVIKIRMQITQSS-----------LRPVFKETVQKEGVRALWR 69
Query: 454 GNFANVIRYFPTQALNFAFKDKYKQV 531
GN + Y A F K K +
Sbjct: 70 GNVVAELLYLVYGAAEFVAFSKLKHL 95
Score = 28.7 bits (61), Expect = 0.76
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = +1
Query: 274 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 453
L+G I+ A SK + P++ V LQ YK D F+ I + G+ +R
Sbjct: 197 LSGVIAGAGSKAIMFPVDTVVKTLQT--------FPSNYKSFKDCFLSIYRNSGIKGLYR 248
Query: 454 GNFANVIRYFP 486
G ++++ P
Sbjct: 249 GLSVSMLKVAP 259
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 34.7 bits (76), Expect = 0.012
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 12/109 (11%)
Frame = +1
Query: 214 IT*SNKMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVS----KQIAAD 381
+T +N SN P + F+AGG++ + A AP++ VK LQ KQ A
Sbjct: 34 LTKANNASNERAPPPLSH-FIAGGVAGMLGAIATAPLDVVKTRLQSDFYKDRFLKQTAKS 92
Query: 382 Q-----RYKGIVDAFV---RIPKEQGLLSFWRGNFANVIRYFPTQALNF 504
+ Y+ +D + + +G + +RG N+I P +++NF
Sbjct: 93 KSPLTAAYRHFMDTCIILKNVKVHEGTRALFRGLGPNLIGTIPARSINF 141
Score = 30.3 bits (65), Expect = 0.25
Identities = 19/74 (25%), Positives = 35/74 (47%)
Frame = +1
Query: 283 GISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNF 462
GI+ ++ P E V+ L+ S I +Y G++ F + EQG++ + G
Sbjct: 280 GIAKFMAAGIAYPHEVVRTRLRQ---SPSINGTPKYTGLIQCFKLVWMEQGIVGLYGGLT 336
Query: 463 ANVIRYFPTQALNF 504
A+++R P + F
Sbjct: 337 AHLLRVVPNACILF 350
>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 31.1 bits (67), Expect = 0.14
Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 5/129 (3%)
Frame = +1
Query: 274 LAGGISAAVSKTAVAPIERVKLLLQV--QHVSKQIAADQRYKGIVDAFVRIPKEQGLLSF 447
+AG + +S T V+PIE + +Q H A + + + D + ++G+L+
Sbjct: 141 IAGASARTISATIVSPIELFRTRVQAVGGHYPPGHAREIANE-VFDGLKLMIHQKGILNL 199
Query: 448 WRGNFANVIRYFPTQALNFAFKDKYKQVFLGRVLTRRRSSGVTS---LVIWPPGGAAGAT 618
W G + R P A + ++ + LG + SS ++ + + GG +G
Sbjct: 200 WSGVSVTLWRDVPFSAFYWWSYERIRLFLLGHPSLQAFSSSQSTKDLYINFVSGGISGTL 259
Query: 619 SLCFVYPLD 645
+ P D
Sbjct: 260 ATLLTQPFD 268
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 27.1 bits (57), Expect = 2.3
Identities = 24/120 (20%), Positives = 46/120 (38%)
Frame = +1
Query: 229 KMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDA 408
K L P + L G ++ + +A+ P++ +K QV Y G +
Sbjct: 13 KTLQLYTPQYYGLCTLGGLLACGTTHSAITPLDLIKCRKQVN--------PNIYPGNIAG 64
Query: 409 FVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGRVLTRRRSSGVTSLVI 588
F I ++GL + G +I Y + F + +K + V ++ TS+ +
Sbjct: 65 FKTILSKEGLRGLYTGGMPTLIGYSLQGCGKYGFYELFKHKYSTLVGAQKAHEYRTSIYL 124
>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 710
Score = 26.6 bits (56), Expect = 3.1
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 3/76 (3%)
Frame = +1
Query: 265 KDFLAGGISAAVSKT--AVAPIERVKLLLQVQHVSK-QIAADQRYKGIVDAFVRIPKEQG 435
KD L GG + V K P + +QV K + A K + D + G
Sbjct: 167 KDHLVGGCADGVIKVWDLSTPNSAIISRMQVDRARKGEAALIWAVKSLRDGTIVSADSSG 226
Query: 436 LLSFWRGNFANVIRYF 483
+ FW G F + + F
Sbjct: 227 AVKFWNGKFFTLSQSF 242
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 413 TKASTIPL*RWSAAICLLTCCTWSSSLTRSMGATAV 306
T+ + + + WSA I +LT C SLT S+ T +
Sbjct: 533 TEENVVYVGLWSADIIMLTYCQDGISLTHSLKLTDI 568
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +1
Query: 397 IVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 489
+++ + + +GL F+RG + V Y PT
Sbjct: 119 VINTISTLARSEGLKGFYRGYWMGVAIYLPT 149
>SPBC29A3.11c |||mitochondrial carboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.0 bits (52), Expect = 9.4
Identities = 21/91 (23%), Positives = 38/91 (41%)
Frame = +1
Query: 262 AKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLL 441
A F A +S+A+S P++ +K+ Q + + I F K +GL
Sbjct: 18 ASTFSAALVSSAISNVIGYPLDSIKVRQQTYN----------FPTIRSCFQNAVKNEGLK 67
Query: 442 SFWRGNFANVIRYFPTQALNFAFKDKYKQVF 534
+RG +I +++++F D K F
Sbjct: 68 GLYRGLTLPLISATLSRSVSFTVYDSLKLTF 98
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,337,416
Number of Sequences: 5004
Number of extensions: 41928
Number of successful extensions: 165
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -