Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_G07
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 253 2e-68
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 249 2e-67
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 44 1e-05
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 29 0.79
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 27 2.4
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 27 3.2
SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom... 26 5.6
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 25 7.4
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 9.7
SPBC365.20c ||SPBC557.06c|nicotinamidase |Schizosaccharomyces po... 25 9.7
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 253 bits (619), Expect = 2e-68
Identities = 121/187 (64%), Positives = 144/187 (77%)
Frame = +3
Query: 102 VLALNEEDVTKMLAATTHLGAENVNFXMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 281
VL ++D+ +LAA +H+G++N+ ME YV+KRR+DG H+INL +TWEKLVLAAR +
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69
Query: 282 AIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 461
IENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV D
Sbjct: 70 TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129
Query: 462 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAXPCNTKSSHSIGLMWWLLAREVLRLX 641
P D Q I EAS+VNIPVIALC+TDS L VD+A P N K SIGL W+LLAREVLRL
Sbjct: 130 PRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLR 189
Query: 642 GVLPVTS 662
G + T+
Sbjct: 190 GNISRTT 196
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 249 bits (610), Expect = 2e-67
Identities = 116/187 (62%), Positives = 144/187 (77%)
Frame = +3
Query: 90 GGLDVLALNEEDVTKMLAATTHLGAENVNFXMETYVYKRRADGTHVINLRRTWEKLVLAA 269
G ++L +ED+ ++LAA H+G++N+ M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64
Query: 270 RAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLL 449
R + IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+
Sbjct: 65 RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124
Query: 450 IVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAXPCNTKSSHSIGLMWWLLAREV 629
+V DP D Q I EAS+VNIPVIALC+TDS L VDIA P N K SIGL+W+LLAREV
Sbjct: 125 VVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREV 184
Query: 630 LRLXGVL 650
LR+ G L
Sbjct: 185 LRVRGTL 191
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 44.4 bits (100), Expect = 1e-05
Identities = 46/190 (24%), Positives = 81/190 (42%), Gaps = 27/190 (14%)
Frame = +3
Query: 135 MLAATTHLGAENV--NFXMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVF 308
+L++ HLG N + ++Y +R +G H+I+L +T L A V +I +
Sbjct: 53 LLSSGAHLGHSTSIWNPYTQPFIYGKR-EGIHIISLDQTMVYLRRAISVVRSIAKENGII 111
Query: 309 VISSRPFGQR-AVLKFAAHTGATPIAGRFTPGAFTN--QIQA------------------ 425
+ GQ+ +V+ A I R+ PG TN ++Q
Sbjct: 112 LFIGTRNGQKDSVVAAAKRARGYHIFDRWLPGLLTNAREVQGKLGGSILCKDNRGKLIQT 171
Query: 426 ----AFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAXPCNTKSSHS 593
++ P L+++L+P ++ EA ++P I + +TD+ R V P N S
Sbjct: 172 DKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRC 231
Query: 594 IGLMWWLLAR 623
L+ LL+R
Sbjct: 232 TDLIAGLLSR 241
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 28.7 bits (61), Expect = 0.79
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +3
Query: 225 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 401
V+++R TW +LV+ + + + N ++ +I++ + V+ FA H PG
Sbjct: 89 VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 27.1 bits (57), Expect = 2.4
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Frame = +3
Query: 360 HTGATPIAGRFTPGAFTNQIQAAFR--EPRLLIVLDPAQDHQPI---TEASYVNIPVIAL 524
+ A P G T+ I A F+ +P + ++ D + T A + + L
Sbjct: 29 YVNAAPHLGHLYSLVLTDAI-ARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQL 87
Query: 525 CNTDSPLRFVDIAXPCNTKSSHSI 596
C+ +S RF D+A NTK +H I
Sbjct: 88 CDRNSK-RFADLAVAANTKFTHFI 110
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 26.6 bits (56), Expect = 3.2
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = -1
Query: 488 SNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRRSTGVRGKLQYSTLTEGP**DD 309
S GL L R + E F + +S + W T + + G+RG ++ EGP D
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP-SAD 225
Query: 308 EHISGVLDG 282
H SGV G
Sbjct: 226 LH-SGVFGG 233
>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 470
Score = 25.8 bits (54), Expect = 5.6
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Frame = +1
Query: 163 QKMLTSXWRPMSTNDVLMVPM*STCVVPGKNLFWL----LVLS*PSRTPLMCSSSHHGPS 330
+K++ S + VL V S +VPG L W+ L + +R +C+ S G S
Sbjct: 270 KKLIPSLLHLDTDGRVLRVDSFSKLIVPGLRLGWITGNSLFIDRITRYAEVCTESPSGVS 329
Query: 331 VSVLY*SLPR 360
VLY L R
Sbjct: 330 QVVLYAILNR 339
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 7.4
Identities = 6/25 (24%), Positives = 17/25 (68%)
Frame = -3
Query: 309 RTHQRGSRWLRQHEQPEQVFPRYDA 235
R H++ + W ++HE+P+ + +++
Sbjct: 571 RFHKKYTTWFQRHEEPKMITDEFES 595
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 193 MSTNDVLMVPM*STCVVPGKNLFWLLVL 276
M+ N V + + T PG N FW L++
Sbjct: 920 MTLNPVFQIGLNGTTHSPGNNSFWPLII 947
>SPBC365.20c ||SPBC557.06c|nicotinamidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 220
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -3
Query: 108 RARLILPT-SLRLFELRLNAYNATGRRNGLKEV 13
R ++P S RL E Y+A GR NGLK +
Sbjct: 112 RIEFVIPKGSDRLVESYSGFYDAIGRDNGLKAI 144
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,922,048
Number of Sequences: 5004
Number of extensions: 62934
Number of successful extensions: 137
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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