Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_G07
(662 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 248 2e-66
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 245 2e-65
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 29 3.3
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 4.4
01_06_0364 - 28749825-28750053,28750442-28750621,28751018-287511... 29 4.4
09_04_0594 - 18831011-18831360,18831562-18832111,18832364-188334... 28 5.8
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 28 5.8
05_03_0609 - 16161801-16162848,16163525-16163682,16163806-161638... 28 7.6
04_04_0907 + 29304830-29305030,29305296-29305547 28 7.6
03_02_0792 + 11236785-11237337,11237711-11238261,11238446-112386... 28 7.6
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 7.6
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 28 7.6
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 248 bits (608), Expect = 2e-66
Identities = 117/195 (60%), Positives = 146/195 (74%), Gaps = 1/195 (0%)
Frame = +3
Query: 72 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFXMETYVYKRRADGTHVINLRRTWE 251
++A G L+ E+DV MLAA HLG +N +F ME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 252 KLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAF 431
KL LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
Query: 432 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAXPCNTKSSHSIGLMWW 611
EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI P N K +SIG ++W
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFW 180
Query: 612 LLAREVLRLXG-VLP 653
LLAR VL++ G +LP
Sbjct: 181 LLARMVLQMRGTILP 195
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 245 bits (600), Expect = 2e-65
Identities = 114/184 (61%), Positives = 140/184 (76%), Gaps = 1/184 (0%)
Frame = +3
Query: 105 LALNEEDVTKMLAATTHLGAENVNFXMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 284
L+ E+D+ MLAA HLG +N +F ME YVYKRR DG ++INL +TWEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 285 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 464
IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131
Query: 465 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAXPCNTKSSHSIGLMWWLLAREVLRLXG 644
DHQPI E++ NIP IA C+TDSP+R+VDI P N K SIG ++WLLAR VL++ G
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRG 191
Query: 645 -VLP 653
+LP
Sbjct: 192 TILP 195
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 29.1 bits (62), Expect = 3.3
Identities = 22/78 (28%), Positives = 27/78 (34%)
Frame = +2
Query: 125 CHQNACCNHPSWGRKC*LPXGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSHREPR*C 304
CH C P GR+ P G + CD A+ G TC C H+ P C
Sbjct: 324 CHAGKCGGCPLQGRRT-CPCGKKDYPSL----DCDAEAATCGSTCEKVLGCGRHKCPERC 378
Query: 305 VRHLITALRSACCTEVCR 358
R T+ CR
Sbjct: 379 HRGSCVETCRLVITKSCR 396
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 172 TFSAPRWVVAASILVTSSSLRASTSNP 92
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>01_06_0364 -
28749825-28750053,28750442-28750621,28751018-28751147,
28751442-28751756,28752033-28752075,28752108-28752500
Length = 429
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 314 LITALRSACCTEVCRAHRCYAYCGAFHTRCF 406
L+ LR T+V RAHRC A T CF
Sbjct: 97 LLPLLRRRGATDVVRAHRCIPLHPALITSCF 127
>09_04_0594 -
18831011-18831360,18831562-18832111,18832364-18833406,
18833496-18833760,18835194-18835340,18835431-18835511,
18835626-18835804,18835935-18836093,18836269-18836398,
18836935-18837094,18837337-18837419,18837865-18837915,
18838035-18838151,18838273-18838359
Length = 1133
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = +3
Query: 24 VHFASQWHYTRLVVTQISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFXMETY 194
V F ++W + + T + G L +ED+ K L+A H E + MET+
Sbjct: 240 VPFIAEWFRNKGHYIKSQVTAATGAIALMQLQEDLKKHLSAECHYTEEELEAYMETH 296
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = -3
Query: 354 QTSVQHADRRAVMR*RTHQRGSRWLRQHEQPEQVFPRYDAS*SHGYHQHVVC 199
+ SV + D+ ++ RT RGS L QPE + PRY+ H VC
Sbjct: 269 KNSVNNDDKPMLVSIRTKGRGSSTLPSIAQPEPL-PRYNKHWRRKAHSMCVC 319
>05_03_0609 -
16161801-16162848,16163525-16163682,16163806-16163835,
16164242-16164323,16164599-16164672
Length = 463
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -1
Query: 617 QQPPHQTNRVGRLGVAWXSNVHKS*WGVCVAQS 519
+ PP Q RVG GV H WG C +S
Sbjct: 17 EMPPVQPGRVGLWGVTVRCRDHGRCWGFCWVES 49
>04_04_0907 + 29304830-29305030,29305296-29305547
Length = 150
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 462 PAQDHQPITE-ASYVNIPVIALCNTDSPLRFVDIAXPCNT 578
P D + E A+ NIP+I L + D P +IA C T
Sbjct: 23 PESDRPRLAEVATDSNIPLIDLASPDKPRVIAEIAQACRT 62
>03_02_0792 +
11236785-11237337,11237711-11238261,11238446-11238628,
11238768-11238966,11239055-11239761
Length = 730
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +3
Query: 360 HTGATPIAGRFTPGAFTNQIQAAFREPRLLI--VLDPAQDHQPITEASYVNIPVIALCNT 533
HT +T R TP AF + AA E R+ + + ++ EA Y +I V + +
Sbjct: 270 HTLSTGETVRVTPAAFDSVTPAAIDETRVAVAAIRQKSEFSDVRVEAQYRHIEVFDMRSP 329
Query: 534 DSPLRFVDIAXP 569
+ P++ P
Sbjct: 330 EQPMQITRNTRP 341
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 179 PXGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSH 286
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 215 WYPCDQLASYLGKTCSGCSCCRSHREP 295
++PC +GKT S C + HR P
Sbjct: 615 YHPCQPTVRLMGKTVSVCERSKEHRVP 641
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,327,147
Number of Sequences: 37544
Number of extensions: 467764
Number of successful extensions: 1100
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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