Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_G05
         (648 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.2  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   2.2  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   2.2  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 303 QWHRPYHPREAWQGRRALH 359
           QW +P  PRE    RR  H
Sbjct: 585 QWCKPCRPREQLTWRRNFH 603


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 303 QWHRPYHPREAWQGRRALH 359
           QW +P  PRE    RR  H
Sbjct: 477 QWCKPCRPREQLTWRRNFH 495


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
 Frame = +3

Query: 276 DSGHAVHLPQWHRPYHPREA-WQGRRALHEDTASCG 380
           D G   HLP  H  + P  A +Q    L ++    G
Sbjct: 398 DGGEVAHLPNTHMGHEPGAAYYQNENMLQKNAEYSG 433


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
 Frame = +3

Query: 276 DSGHAVHLPQWHRPYHPREA-WQGRRALHEDTASCG 380
           D G   HLP  H  + P  A +Q    L ++    G
Sbjct: 346 DGGEVAHLPNTHMGHEPGAAYYQNENMLQKNAEYSG 381


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,790
Number of Sequences: 336
Number of extensions: 2956
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)