Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_G03
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho... 105 4e-24
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 30 0.34
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 28 1.0
SPBC19G7.13 |trf1||telomeric DNA binding factor Trf1|Schizosacch... 27 1.8
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 27 3.1
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 27 3.1
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 4.1
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 26 4.1
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 25 7.2
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 25 7.2
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual 25 9.5
>SPAC1F12.02c |p23fy||translationally controlled tumor protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 105 bits (253), Expect = 4e-24
Identities = 60/132 (45%), Positives = 82/132 (62%)
Frame = +2
Query: 200 DIQIEGFNPSAEEADEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVXK 379
D+ I G NPSAE+A+E + E+ ++V + RL T +F DKKSY Y+K YMK + +
Sbjct: 42 DVDI-GANPSAEDAEENAEEGTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMKAIKAR 98
Query: 380 LEXKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMVAMMEYXDFDGTQIPIM 559
L+ P++V VF+ N +K IL FK+ F+ GESMD D MV +M Y + DG P M
Sbjct: 99 LQESNPERVPVFEKNAIGFVKKILANFKDYDFYIGESMDPDAMVVLMNYRE-DGI-TPYM 156
Query: 560 MFFKHGLQXEKF 595
+FFK GL EKF
Sbjct: 157 IFFKDGLVSEKF 168
Score = 50.0 bits (114), Expect = 3e-07
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = +1
Query: 79 MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQG 198
M +YKD+I+GDE+ SD Y +K VD+++YE ++VT QG
Sbjct: 1 MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQG 40
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 29.9 bits (64), Expect = 0.34
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +2
Query: 275 VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVXKLEXKAPDQVEVFKT 421
+D V ++L+E F ++K T+YLK + L K + PD VE T
Sbjct: 89 IDEVSLNKLIEKVGFHNRK--TIYLKQMARILSEKFQGDIPDTVEDLMT 135
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 28.3 bits (60), Expect = 1.0
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -3
Query: 295 VVQDYVNSALDGRVRALVSLFSRRIKTLDLDISPVL 188
V++D +NS LDG + + S R +T LD+S ++
Sbjct: 341 VLEDQMNSLLDGSLYGICRPLSSRAQTSVLDLSDIV 376
>SPBC19G7.13 |trf1||telomeric DNA binding factor
Trf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 27.5 bits (58), Expect = 1.8
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = -1
Query: 222 LKPSIWISALCSRHQPTGHFVNNFI--DQFHFVGVREHLITSDNVLIDLHFDGLEAIKNN 49
LK +ISA+ +P G +N+ D H +R + D+ L + +E
Sbjct: 223 LKTQAYISAMAQAERPKGDILNDLFPSDMAHRFLIRRN-AKLDDKLTYVEKQIIEKCTAR 281
Query: 48 KNRKNGFSPQQ 16
K R FSPQ+
Sbjct: 282 KERLANFSPQE 292
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -1
Query: 636 ASLELLSYXLXNI*NFSXCRPCLKNIMIGICVPSKSXY 523
AS ELL+ NFS R CL+N ++ CVP Y
Sbjct: 781 ASFELLNNLTEARKNFSNYRDCLENCVLP-CVPFLGVY 817
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -2
Query: 116 ISSPVIMSL*IFILMDWRRLKII 48
ISSP I + IFILM+ RL +I
Sbjct: 1220 ISSPTIFVINIFILMNQERLNLI 1242
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -2
Query: 551 VFAYHQSLYIPSWQPC-HHN 495
V A+ Q L++P W PC HN
Sbjct: 336 VVAFTQGLFLPRWLPCIKHN 355
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 138 HFVGVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGF 28
+F + + L T + LI + +E+IK KNR +GF
Sbjct: 503 YFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGF 539
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -3
Query: 475 ELKFLKPAEDVFHYFVHVCFKYFNLVR 395
+ FLKP ++ YF+ + +Y +L+R
Sbjct: 175 QFDFLKPNNALYPYFMRIVQQYTSLIR 201
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -1
Query: 207 WISALCSRHQPTGHFVNNFIDQFHFVG 127
W S CS+ TG +NFI F G
Sbjct: 216 WFSRRCSKINITGSVFDNFIPSFFSFG 242
>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
Length = 629
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = -1
Query: 84 LHFDGLEAIKNNKNR-KNGFSPQQLNXES 1
LH D +A +N NG+ PQ LN S
Sbjct: 437 LHHDKFDACTKGENTANNGYGPQTLNETS 465
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,443,715
Number of Sequences: 5004
Number of extensions: 47057
Number of successful extensions: 121
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -