Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_G03
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   3.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.0  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   7.9  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -3

Query: 535 KVXIFH-HGNHAITIHRLPSKELK 467
           K+ +F  H N  IT++R P  + K
Sbjct: 151 KIHVFSLHDNKLITMYRFPQNQFK 174


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +2

Query: 92   RTLSLVMRCSLTPTK*NWSMKLFTK*PVGW*REHRADIQIEGFNPSAEEADEGTDSAVES 271
            +TL+ V++  +   K N++  L     +G   +   D+++EGF       D  T S  +S
Sbjct: 1018 KTLNEVLQADMNALK-NFNQPLLVNDQLG---QLYLDLEVEGFETKLVLEDGITSSGSDS 1073

Query: 272  G 274
            G
Sbjct: 1074 G 1074


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = -2

Query: 143 NFIL*VSENISSPVIMSL*IFILMDWRRLKIIKTE 39
           +F+L VS  I++ V  +  IF+ + W + ++++ +
Sbjct: 230 SFLLYVSGFITTEVAGTYAIFLYISWHQKELVRRD 264


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/39 (30%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = +2

Query: 239 ADEGTDSAVESG-VDIVLNHRLVETYAFGDKKSYTLYLK 352
           +DE   +A++SG  +  +N+ L++T  +GD K++ + +K
Sbjct: 44  SDEKRQAAIQSGDYNYTMNY-LLDTDQWGD-KTFVIIMK 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,240
Number of Sequences: 438
Number of extensions: 3179
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)