Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_G01
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...   174   7e-45
SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein su...    28   0.91 
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    27   1.2  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   2.8  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    25   4.8  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   4.8  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   8.4  

>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score =  174 bits (423), Expect = 7e-45
 Identities = 83/110 (75%), Positives = 96/110 (87%)
 Frame = +1

Query: 136 EKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAXKXKLRVKGPVRMPTKILRITTRK 315
           +K Q   S +HRIRITLTSRNVR+LEKVC+DL+N A   +LRVKGPVR+PTKIL+ITTRK
Sbjct: 8   QKEQQIPSTVHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKILKITTRK 67

Query: 316 TPCGEGSKTWDRFXMXIHXRVIDLHSPSEIVKQITSINIEPGVQVEVTIA 465
           TP GEGSKTW+ + M IH R+IDLHSPSEIVKQITSI+IEPGV+VEVTIA
Sbjct: 68  TPNGEGSKTWETYEMRIHKRLIDLHSPSEIVKQITSIHIEPGVEVEVTIA 117


>SPBC211.01 |rsm10|SPBC23E6.11|mitochondrial ribosomal protein
           subunit S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 224

 Score = 27.9 bits (59), Expect = 0.91
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +1

Query: 253 KLRVKGPVRMPTKILRITTRKTPCGEGSKTWDRFXMXIHXRVIDLHSPSEI 405
           K+ +KGP  +P K+   T  ++P    S + + F    H R+I L+S + +
Sbjct: 92  KIPIKGPRPLPNKVESWTLLRSPFIHKS-SQENFERITHSRLIQLYSVNPV 141


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 109 AAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRS 207
           A V +  D+EKPQ +V+   R+   L S N R+
Sbjct: 491 ANVTTSADVEKPQVKVATSSRVDYDLKSPNQRT 523


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +1

Query: 118  VSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAXKXKLRVK 267
            +S   IEKP+A  SPIH       +  +R L+ V      GA + +  VK
Sbjct: 891  LSSSLIEKPRASSSPIHH----ANNNGLRLLKDVLKKTYRGARENRSSVK 936


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 389 CRSITLLWIXX*KRSQVFEPSPQ 321
           C +  L W+   KRSQ   PSP+
Sbjct: 331 CLNFALAWMFEFKRSQYSNPSPE 353


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 90  IPAEINNFSIKNCSALNRRNL 28
           + +E+N+  IKN S LN RNL
Sbjct: 592 LESELNSSKIKNESLLNERNL 612


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 129 RHRETPGRGLPYPP 170
           R  ETPGR LP+ P
Sbjct: 163 RANETPGRNLPFSP 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,969,780
Number of Sequences: 5004
Number of extensions: 37606
Number of successful extensions: 87
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)