Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_G01
(501 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514 162 2e-40
03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294 161 3e-40
06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923 159 1e-39
03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504... 45 3e-05
07_01_0344 - 2490700-2493249 30 0.91
03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794... 30 1.2
12_02_0964 - 24860373-24860381,24860427-24860768,24861436-248615... 29 2.1
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 28 4.8
11_06_0743 + 26847652-26849424 27 6.4
05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663 27 6.4
05_05_0026 + 21645845-21647404 27 6.4
06_02_0345 + 14833838-14833997,14834095-14834552,14834633-148348... 27 8.5
>10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514
Length = 130
Score = 162 bits (393), Expect = 2e-40
Identities = 76/121 (62%), Positives = 94/121 (77%)
Frame = +1
Query: 106 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAXKXKLRVKGPVRMP 285
A + G + +A ++RIRITL+S+NV++LEKVCADL+ GA +LRVKGPVR+P
Sbjct: 9 AGGAMKGGKLGMEEARELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKGPVRIP 68
Query: 286 TKILRITTRKTPCGEGSKTWDRFXMXIHXRVIDLHSPSEIVKQITSINIEPGVQVEVTIA 465
TK+L ITTRK+PCGEG+ TWDRF IH RVIDL S ++VKQITSI IEPGV+VEVTIA
Sbjct: 69 TKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEPGVEVEVTIA 128
Query: 466 D 468
D
Sbjct: 129 D 129
>03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294
Length = 127
Score = 161 bits (391), Expect = 3e-40
Identities = 80/126 (63%), Positives = 97/126 (76%), Gaps = 4/126 (3%)
Frame = +1
Query: 103 MAAAVV----SGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAXKXKLRVKG 270
MAAA V G + +A ++RIRITL+S+NV++LEKVCADL+ GA +LRVKG
Sbjct: 1 MAAAAVYGGMKGGKLGVEEAHELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKG 60
Query: 271 PVRMPTKILRITTRKTPCGEGSKTWDRFXMXIHXRVIDLHSPSEIVKQITSINIEPGVQV 450
PVR+PTK+L ITTRK+PCGEG+ TWDRF IH RVIDL S ++VKQITSI IEPGV+V
Sbjct: 61 PVRIPTKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEPGVEV 120
Query: 451 EVTIAD 468
EVTIAD
Sbjct: 121 EVTIAD 126
>06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923
Length = 128
Score = 159 bits (386), Expect = 1e-39
Identities = 77/121 (63%), Positives = 95/121 (78%)
Frame = +1
Query: 106 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAXKXKLRVKGPVRMP 285
A + SGK + EV HRIRITL+S++V++LEKVC DL+ GA L+VKGPVRMP
Sbjct: 9 APPMKSGKIGFESSQEVQ--HRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMP 66
Query: 286 TKILRITTRKTPCGEGSKTWDRFXMXIHXRVIDLHSPSEIVKQITSINIEPGVQVEVTIA 465
TK+L ITTRK+PCGEG+ TWDRF M +H RVIDL S +++VKQITSI IEPGV+VEVTI+
Sbjct: 67 TKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTIS 126
Query: 466 D 468
D
Sbjct: 127 D 127
>03_02_0020 -
5045900-5046211,5046233-5046290,5046604-5047242,
5048475-5048515,5048672-5048728,5048952-5049140
Length = 431
Score = 45.2 bits (102), Expect = 3e-05
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 1/104 (0%)
Frame = +1
Query: 154 VSPIHRIRITLTSRNVRSLEKVCADLINGAXKXKLRVKGPVRMPTKILRITTRKTPCGEG 333
++P +IRI L S V +E C +I A + GPV +PTK +P
Sbjct: 329 LAPKQKIRIKLRSYWVPLIEDSCKKIIEAAKTTNAKTMGPVPLPTKRRVYCVLNSPHVHK 388
Query: 334 SKTWDRFXMXIHXRVIDLHSP-SEIVKQITSINIEPGVQVEVTI 462
+ F + H R+ID+ P ++ + + + + GV VEV +
Sbjct: 389 DSRF-HFEIRTHQRLIDIMYPTAQTIDSLMQLQLPAGVDVEVKL 431
>07_01_0344 - 2490700-2493249
Length = 849
Score = 30.3 bits (65), Expect = 0.91
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 170 RWIGETSAWGFSMSLPDTTAAA 105
RWIG++S F++SLP T A A
Sbjct: 46 RWIGDSSPKNFTLSLPGTVATA 67
>03_06_0314 -
33077621-33077869,33078218-33078280,33079392-33079449,
33079534-33079688,33079797-33080106,33080634-33080890,
33081280-33081359,33083888-33083948
Length = 410
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 198 CALAREGLC*PNQWSQXTXAACKGPSP 278
C LA EGL ++W++ A +GPSP
Sbjct: 155 CRLAAEGLVTASKWARPGRAGTRGPSP 181
>12_02_0964 -
24860373-24860381,24860427-24860768,24861436-24861583,
24862070-24862089
Length = 172
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 78 SRPEFNKQHGSRCSVRQRHRETPGRGLPYPPHQDH 182
+RPE GSR + R+ R G P PPH H
Sbjct: 90 ARPEAAAGGGSRGTARRILRSASGSATPLPPHHLH 124
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 105 GSRCSVRQRHRETPGRGLPYPP 170
G CS R+RHR G LP+ P
Sbjct: 73 GVTCSRRRRHRRVTGLSLPHTP 94
>11_06_0743 + 26847652-26849424
Length = 590
Score = 27.5 bits (58), Expect = 6.4
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Frame = +3
Query: 84 PEFNKQHGSRCSVRQRHR-ETPGRGLPYPPHQDHSYFSQCALAREGLC*PNQWS 242
PE + RCS R R R P PP + + + A G P+ WS
Sbjct: 296 PELRRARSGRCSPRCRRRARAPPSSSTSPPWPEPALPAAARTAAAGRSLPHSWS 349
>05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663
Length = 741
Score = 27.5 bits (58), Expect = 6.4
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 99 QHGSRCSVRQRHRETPGRGLPYPPHQDHSYFSQCALAR 212
+H SRCS R R R T P QD + + CA +
Sbjct: 676 RHSSRCSCRYRSRRTRSPSSLTPRDQDGTGDAGCATTK 713
>05_05_0026 + 21645845-21647404
Length = 519
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 251 CXLAPLIRSAQTFSSERTL 195
C L PL+RSA ++ SER L
Sbjct: 171 CRLIPLLRSASSYGSERLL 189
>06_02_0345 +
14833838-14833997,14834095-14834552,14834633-14834870,
14834974-14835431,14836554-14836955
Length = 571
Score = 27.1 bits (57), Expect = 8.5
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Frame = +3
Query: 171 HQDHSYFSQCALAREGLC*PNQWSQXTXAACKG--PSPH---ANQDPA 299
H S +CAL R+G +W T C G P+P +QDPA
Sbjct: 11 HHLQSTLFECALLRDGRAESFEWLFETFKNCMGNCPTPRCILTDQDPA 58
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,768,164
Number of Sequences: 37544
Number of extensions: 289004
Number of successful extensions: 668
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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