Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_F24
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    27   3.1  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    26   5.5  
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma...    26   5.5  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    25   7.3  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   7.3  
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    25   7.3  
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    25   9.6  

>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +3

Query: 375 PSTRLSKSPMPTLHP-TKKKSMQPXPYCRMTR*PWKTSMMPILTW--PLIPSRSQPSGH- 542
           P +    SP P L P ++  S++       ++       +PI T   PLIPS SQ S H 
Sbjct: 42  PVSLFCSSPYPNLPPHSRSSSLESKKPSVASQDVKSDGTLPIGTNNNPLIPSHSQESSHW 101

Query: 543 TLRKSS 560
           T+R  S
Sbjct: 102 TIRHES 107


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 146 QKAHLAAFKIKSDNYLRRVLANPPEPPKIN 235
           Q +  + FK  S++YL + ++  PE P++N
Sbjct: 72  QSSTESLFKADSEDYLCKKVSKGPESPRVN 101


>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +3

Query: 162 LLSK*NPIIISEGY*PIHLNRPRLTGLCTNRLYLFL 269
           LL   NPI  S      HLN+  +T LC N    FL
Sbjct: 259 LLVNLNPIYFSTARRFEHLNKSLITTLCLNNYLSFL 294


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +2

Query: 68  KRRKMAKRISQSAVNWAALAERVPAEQKAHLAAFKIKSDNYLRRVLANPPEPPKINWAV 244
           +R   A R +   + WA+L +     +        + SD+YL   L NP    K + A+
Sbjct: 301 ERSVSAMRNTFQLIKWASLLKYPLVPELTPAVVENLDSDSYLAIALINPTSQVKASKAI 359


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = +2

Query: 395 ESNANIASYQKEINATXALLPYDQMTMEDFYDAH----PDLALDPIKKPTFWPHTPEEQL 562
           E +A I  ++        + PYD + +ED +++     P++ LDP     F  + PEE  
Sbjct: 661 EDSAIIGPWKSGTTLRNLIYPYDTIELEDSWNSSWGCIPNIELDPY---AFKLYVPEE-- 715

Query: 563 DYVD 574
           D+++
Sbjct: 716 DFIE 719


>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +2

Query: 371 NAIDAFIQESNANIASYQKEINATXALLPYDQMTMEDFYDAHPD 502
           +++DAF+ E+    +   + I+    LL  +  + +D  D HP+
Sbjct: 87  SSLDAFLNETPQTASYSARNIDDALDLLSLNNSSSKDKIDRHPE 130


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 531 PSGHTLRKSSSTMSTXRNKLSLLQLQLHTNIVKVLLA 641
           PS   L+KS +T ST      L QLQ     +++LLA
Sbjct: 406 PSHSLLQKSKNTSSTKALTSHLEQLQQENQQLRMLLA 442


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,746,735
Number of Sequences: 5004
Number of extensions: 59260
Number of successful extensions: 145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)