Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_F24
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1351 - 35855543-35856751 29 2.5
03_01_0465 + 3598815-3598972,3599949-3600711,3601073-3601159,360... 28 5.7
03_01_0448 - 3444608-3444814,3446419-3446497,3446567-3446691,344... 28 5.7
12_01_0273 - 1989058-1989349,1989730-1989837,1990315-1990508,199... 28 7.5
11_01_0272 - 2042490-2042781,2043146-2043203,2043385-2043401,204... 28 7.5
08_02_0818 - 21524539-21524664,21524911-21524961,21525800-215261... 28 7.5
08_02_0311 - 15635165-15635590,15635777-15638698 28 7.5
03_05_0331 - 23233883-23233972,23234099-23234164,23234300-232343... 28 7.5
10_08_0535 + 18613223-18613717,18615858-18616373 27 9.9
>02_05_1351 - 35855543-35856751
Length = 402
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 375 PSTRLSKSPMPTLHPTKKKSMQPXPY 452
PS + +P+P +HP+ S P PY
Sbjct: 179 PSPPIPATPLPRVHPSSSSSPSPSPY 204
>03_01_0465 +
3598815-3598972,3599949-3600711,3601073-3601159,
3601263-3601346,3601428-3601514,3601608-3601694,
3602239-3602292,3602380-3602471,3602564-3602678,
3602763-3602913,3603010-3603155
Length = 607
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 428 EINATXALLPYDQMTMEDFYDAHPDLALDPI 520
+ NAT P+ + M HPDLA+DP+
Sbjct: 464 DFNATPGSTPHGLLAMGKVDLMHPDLAIDPL 494
>03_01_0448 -
3444608-3444814,3446419-3446497,3446567-3446691,
3446765-3446809,3447070-3447165,3447344-3447417,
3447526-3447649,3447975-3448109,3448206-3448535,
3448610-3448762,3448840-3449391,3449569-3449648,
3450395-3450506,3450579-3450749,3450820-3450879
Length = 780
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 355 VESSQECHRRVYPRVQCQHCILPKRNQCNQXPTAV*PDDHGRLL*CP 495
+E S+ C + R+ C+H + PKR + PD R L CP
Sbjct: 34 IEDSEYCGEELGTRLTCRHGLTPKRRTAWEG-----PDTGRRFLGCP 75
>12_01_0273 -
1989058-1989349,1989730-1989837,1990315-1990508,
1990601-1990717,1990801-1990966,1991323-1991490,
1991734-1993052
Length = 787
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 518 WDQGPGQDGHHRSLPWSSGHTAVGXWLH*FLFGR 417
W G QDGH R + W GH +G W + GR
Sbjct: 206 WRDGL-QDGHGRYI-WRGGHEYIGTWKAGEMHGR 237
>11_01_0272 -
2042490-2042781,2043146-2043203,2043385-2043401,
2043572-2043765,2043858-2043974,2044059-2044224,
2044430-2044597,2044741-2046047
Length = 772
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 518 WDQGPGQDGHHRSLPWSSGHTAVGXWLH*FLFGR 417
W G QDGH R + W GH +G W + GR
Sbjct: 207 WRDGL-QDGHGRYI-WRGGHEYIGTWKAGEMHGR 238
>08_02_0818 -
21524539-21524664,21524911-21524961,21525800-21526170,
21526497-21526852,21527926-21527996
Length = 324
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 327 TLRRHL*NRS-GIKSRMPSTRLSKSPMPTLHPTKKKSMQPXP 449
T R H +R+ G ++R+P R ++ P P P+++ S P
Sbjct: 56 TARGHSVHRAQGFEARLPPLRSARLPSPEAEPSRRSSAAEKP 97
>08_02_0311 - 15635165-15635590,15635777-15638698
Length = 1115
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +2
Query: 65 KKRRKMAKRISQSAVNWAALAERVPAEQKAHLAAFKIKSDNYLRRVLANPPEPPKINWAV 244
K RR++ + + V L + + A A +K +LR A+P E PK+ A
Sbjct: 477 KDRRRVKREFDEFKVRINGLPDSIRRRSDAFNAREDMKMLKHLRETGADPSEQPKVKKAT 536
Query: 245 Y 247
+
Sbjct: 537 W 537
>03_05_0331 -
23233883-23233972,23234099-23234164,23234300-23234365,
23234451-23234675,23234794-23235279
Length = 310
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -1
Query: 566 SRAALPECVARRLAS*WDQGPGQDGHHRSLPWSSGHTAVGXWLH 435
S+A E +A+ L + + G+D HH+ LPWS T +LH
Sbjct: 19 SQAEESEMMAQLLGTCFPSN-GEDDHHQELPWSV-DTPSAYYLH 60
>10_08_0535 + 18613223-18613717,18615858-18616373
Length = 336
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = -1
Query: 365 LDSTAILQVPSECQLGMEFLELHIAXGMCLPFQE----*VQPVC 246
+D TA LQV E LG+ +L + A M L F E ++P+C
Sbjct: 202 IDRTAALQVRRELWLGLAYLVVQTAGFMRLTFWELSWDVMEPIC 245
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,420,288
Number of Sequences: 37544
Number of extensions: 416135
Number of successful extensions: 1141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1141
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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