Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_F24
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13064| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_53609| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_1687| Best HMM Match : LRR_2 (HMM E-Value=4.6e-07)                  28   7.7  

>SB_13064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 488

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +2

Query: 110 NWAALAERVPAEQKAHLAAFKIKSDNYLRRVLANPPEPPKINW--AVYKQAVPIPGM 274
           NW         EQ+ +L  F+   + Y R +   PP+   + W    Y Q + IPG+
Sbjct: 174 NWMGFVNCARNEQEQNLEVFQYGGNIYYRAIKDVPPDQELLVWYGGTYMQFLGIPGI 230


>SB_53609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 75

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 317 YPADTQTALVESQWNQVKNAIDAFIQESNANIASYQKEINAT 442
           +  D    LVES W +V + ID    E +AN  + Q+EI+ T
Sbjct: 31  FSTDYVENLVESFWTRVDDKIDKAFHERDAN-KTTQEEIHQT 71


>SB_1687| Best HMM Match : LRR_2 (HMM E-Value=4.6e-07)
          Length = 483

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -3

Query: 174 ILKAARCAFCSAGTLSARAAQFTALCDILFAIFRRFFD*SYEC 46
           +L+    AFCS G +      FT  C  L +I     D +++C
Sbjct: 175 LLQKLSLAFCSQGNIRTALQSFTEFCPQLHSISLEGCDINHDC 217


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,810,349
Number of Sequences: 59808
Number of extensions: 458671
Number of successful extensions: 1157
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)