Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_F24
(656 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75526-1|CAA99772.1| 191|Caenorhabditis elegans Hypothetical pr... 71 5e-13
AF100664-1|AAC68985.1| 580|Caenorhabditis elegans Hypothetical ... 29 2.2
Z81066-5|CAB02969.1| 777|Caenorhabditis elegans Hypothetical pr... 29 2.9
U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna bindi... 29 2.9
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi... 29 2.9
U23526-5|AAB36850.1| 391|Caenorhabditis elegans Acyltransferase... 28 6.7
AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans nonsense-medi... 28 6.7
AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor wi... 28 6.7
>Z75526-1|CAA99772.1| 191|Caenorhabditis elegans Hypothetical
protein C06H2.1 protein.
Length = 191
Score = 71.3 bits (167), Expect = 5e-13
Identities = 47/144 (32%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Frame = +2
Query: 83 AKRISQSAVNWAALAERVPAEQKAHLAAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVP 262
AKR++ S+VNW+ LAER+ E A L K S + V P + PKI++A K+A+P
Sbjct: 5 AKRVATSSVNWSKLAERLVPEHAAELTRVKGVSGTFQSAVSQLPADLPKIDFAALKKALP 64
Query: 263 I-PGMVDTFXKQYEALKIPYPADTQTALVE-SQWNQVKNAIDAFIQESNANIASYQKEIN 436
++D+ KQYE++KIPY L E QW NA + A+ K++
Sbjct: 65 AHSAVLDSLQKQYESVKIPYGEVPAEYLKEVDQWVDYNNARIKLHEVKVADGLQEAKKVE 124
Query: 437 ATXALLP----YDQMTMEDFYDAH 496
A P +D+ +++ AH
Sbjct: 125 EKWAKAPPVEHFDRQHFVEYFPAH 148
>AF100664-1|AAC68985.1| 580|Caenorhabditis elegans Hypothetical
protein M57.2 protein.
Length = 580
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/77 (22%), Positives = 35/77 (45%)
Frame = +2
Query: 95 SQSAVNWAALAERVPAEQKAHLAAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVPIPGM 274
+++ W A + P + + ++ SD LR V +NP + I+W + +
Sbjct: 299 TENTTGWRAFSSTSPNPTSSRV--WQYLSDTPLRVVTSNPTDLENISWTELNEQPYV--N 354
Query: 275 VDTFXKQYEALKIPYPA 325
+D Y+ +++P PA
Sbjct: 355 LDRLKTIYDVVEVPQPA 371
>Z81066-5|CAB02969.1| 777|Caenorhabditis elegans Hypothetical
protein F17B5.1a protein.
Length = 777
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -3
Query: 138 GTLSARAAQFTALCDILFAIFR---RFFD*SYECTIIPNVENQ 19
G++ R FT +CDI+F F + FD SYE ++ + N+
Sbjct: 311 GSIEQRFGNFTEMCDIMFTHFEAKAQMFD-SYEAKMLVFMRNE 352
>U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform a protein.
Length = 868
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 143 EQKAHLAAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVPIPGMVD 280
E K+ A+ ++D + R ANP PPK+ A K+ P+P D
Sbjct: 170 EDKSQPKAYYQRNDRFQAR--ANPHAPPKLTAAQRKERGPLPRWED 213
>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform b protein.
Length = 1065
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 143 EQKAHLAAFKIKSDNYLRRVLANPPEPPKINWAVYKQAVPIPGMVD 280
E K+ A+ ++D + R ANP PPK+ A K+ P+P D
Sbjct: 367 EDKSQPKAYYQRNDRFQAR--ANPHAPPKLTAAQRKERGPLPRWED 410
>U23526-5|AAB36850.1| 391|Caenorhabditis elegans
Acyltransferase-like protein 12 protein.
Length = 391
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 338 ALVESQWNQVKNAIDAFIQESNANIASYQKE 430
A+V + WN V + A + E N+A Y +E
Sbjct: 86 AMVNAHWNAVSVFVGATVTEYGTNLAGYAEE 116
>AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans
nonsense-mediated mRNA decay trans-acting factor
protein.
Length = 1069
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +2
Query: 407 NIASYQKEINATXALLPYDQMTMEDFYDAHPDLALDPIKKPTFWPHTPEEQLDYVD 574
N+ S ++++ + + ME+ + HP+ +D + KP QL YVD
Sbjct: 216 NVPS-EEQVARARKITATQAVRMEELWRDHPEATVDDLNKPGLDREPDHVQLRYVD 270
>AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 2 protein.
Length = 1069
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +2
Query: 407 NIASYQKEINATXALLPYDQMTMEDFYDAHPDLALDPIKKPTFWPHTPEEQLDYVD 574
N+ S ++++ + + ME+ + HP+ +D + KP QL YVD
Sbjct: 216 NVPS-EEQVARARKITATQAVRMEELWRDHPEATVDDLNKPGLDREPDHVQLRYVD 270
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,330,567
Number of Sequences: 27780
Number of extensions: 341048
Number of successful extensions: 928
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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