Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_F24
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52300.1 68416.m05748 ATP synthase D chain-related contains w...    41   6e-04
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro...    29   2.7  
At2g18220.1 68415.m02123 expressed protein contains Pfam domain ...    29   2.7  
At2g02660.1 68415.m00205 hypothetical protein                          29   2.7  
At5g44590.1 68418.m05464 hypothetical protein                          29   3.6  
At2g07734.1 68415.m00983 ribosomal protein S4 (RPS4) identical t...    28   6.3  
At1g64380.1 68414.m07296 AP2 domain-containing transcription fac...    28   6.3  
At1g30500.1 68414.m03728 CCAAT-binding transcription factor (CBF...    28   6.3  

>At3g52300.1 68416.m05748 ATP synthase D chain-related contains weak
           similarity to ATP synthase D chain, mitochondrial (EC
           3.6.3.14) (Swiss-Prot:P31399) [Rattus norvegicus]
          Length = 168

 Score = 41.1 bits (92), Expect = 6e-04
 Identities = 23/97 (23%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
 Frame = +2

Query: 218 EPPKINWAVYKQAVPIPGMVDTFXKQYEALKIPYPADTQTALVESQWNQVKNAIDAFIQE 397
           EP  I+W  Y++ +   G+VD + + Y++++IP   D  T   + +++ +   +    Q+
Sbjct: 58  EPEPIDWDYYRKGIGA-GIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQK 116

Query: 398 SNANIASYQKEI-NATXALLPYDQMTMEDFYDAHPDL 505
           S       +KEI +          MT +++++ HP+L
Sbjct: 117 SLKESERLEKEIADVQEISKKLSTMTADEYFEKHPEL 153


>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
           similarity to SP|O22315 Pre-mRNA splicing factor SF2
           (SR1 protein) {Arabidopsis thaliana}
          Length = 300

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 333 RRHL*NRSGIKSRMPSTRLSKSPMPTLHPTKKKSMQPXP 449
           R H  +RS  +S+ P   LSKSP  +L  +  KS  P P
Sbjct: 226 RSHSRSRSLSRSKSPRKDLSKSPRRSLSRSISKSRSPSP 264


>At2g18220.1 68415.m02123 expressed protein contains Pfam domain
           PF03715: Uncharacterised protein family (UPF0120)
          Length = 779

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 389 IQESNANIASYQKEINATXALLPYDQMTMEDFYDAHPDLALDPIKK 526
           +QE + +   Y KE +A   LL +D   +ED  D  PD  L+  +K
Sbjct: 81  LQEKDPDFFQYMKEHDAE--LLKFDATEIEDDADVEPDTDLEDTEK 124


>At2g02660.1 68415.m00205 hypothetical protein
          Length = 421

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = +2

Query: 173 IKSDNYLRRVLANPPEPPKI----NWAVYKQAVPIPGMVDTFXKQYEALKIPYPAD 328
           I  D Y+ R L   P   +     N   Y++A    G  D   KQY+AL I YP+D
Sbjct: 114 IYGDRYVARPLICNPNTGRYVILPNRYTYRKAYSFFGF-DPIGKQYKALSIAYPSD 168


>At5g44590.1 68418.m05464 hypothetical protein 
          Length = 349

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 247 VHSPVNLGRFRWIG*YPSEIIIGFYFES 164
           VHS +N G   W G Y   ++I F FES
Sbjct: 92  VHSVINKGGQNWTGAYWVNVVIVFNFES 119


>At2g07734.1 68415.m00983 ribosomal protein S4 (RPS4) identical to
           small ribosomal protein 4 [Arabidopsis thaliana]
           GI:1460051
          Length = 362

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = -2

Query: 397 LLDKRVDGILDLIPLRFYKCRLSVSWVWNF*SFILLXECVYHSRNR 260
           LL K +   +DL PLRF  CRL    V N    I+    +   RNR
Sbjct: 3   LLKKLIQRDIDLSPLRFQTCRLLSGNVRNRELTIIQRRILRRLRNR 48


>At1g64380.1 68414.m07296 AP2 domain-containing transcription
           factor, putative contains Pfam profile: PF00847 AP2
           domain
          Length = 335

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 209 NPPEPPKINWAVYKQAVPIPGMVDTFXKQYEALKIPYP 322
           NPP PP++  +VY +   I   ++ F  Q  A+  P+P
Sbjct: 58  NPPPPPQLGSSVYLRQRDI---IEKFHLQNRAISTPHP 92


>At1g30500.1 68414.m03728 CCAAT-binding transcription factor
           (CBF-B/NF-YA) family protein contains Pfam profile:
           PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
          Length = 186

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 182 DNYLRRVLANPPEPPKINWAVYKQAVPIP 268
           D Y R + A PP+P      V +Q VP+P
Sbjct: 62  DPYYRSIFAPPPQPYTGLMGVQQQGVPLP 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,513,908
Number of Sequences: 28952
Number of extensions: 318517
Number of successful extensions: 864
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)