Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_F22
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom... 231 5e-62
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 0.59
SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|ch... 29 0.77
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 27 3.1
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 27 3.1
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 26 4.1
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb... 26 5.5
SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism... 25 7.2
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb... 25 9.5
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p... 25 9.5
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 25 9.5
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 25 9.5
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 25 9.5
>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 260
Score = 231 bits (566), Expect = 5e-62
Identities = 111/200 (55%), Positives = 144/200 (72%), Gaps = 1/200 (0%)
Frame = +1
Query: 55 MPQNEYIERHQKLYGRRLDYXXXXXXXXXXXXXXXXXXXXXLRGIKAKIFNKERRNEKIQ 234
MPQNEYIE + +GRR D+ RGIKAK++ ++RR EKIQ
Sbjct: 1 MPQNEYIEESIRKHGRRFDHEERKRKKAAREAHDASLYAQKTRGIKAKLYQEKRRKEKIQ 60
Query: 235 MKKKIKAHEEKNVKQN-TEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVP 411
MKK IK HEE+N Q ++ +GA+P YLLDR+ +S+AK+LS+ +KQKRKEKA K+ VP
Sbjct: 61 MKKTIKQHEERNATQRGSDAQTQGAVPTYLLDREQESQAKMLSSAVKQKRKEKAAKYSVP 120
Query: 412 IPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKPPKFERFIRPMALRFKK 591
+P+VR A+ E+FKV+++GKSK+ +WKRM+TK TFVG+ FTR+P K+ERFIRPMALR KK
Sbjct: 121 LPQVRGVAEEEMFKVIRTGKSKKNSWKRMITKATFVGDGFTRRPVKYERFIRPMALRQKK 180
Query: 592 AHVTHPELKATFCLPIIGVK 651
A+VTH EL T LPIIGVK
Sbjct: 181 ANVTHKELGVTMQLPIIGVK 200
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 29.1 bits (62), Expect = 0.59
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -1
Query: 300 FGDLLCVLFDILLFVRFDFLFHLNLFIAAFLIEYF-SFDTAEFARLFSAFMRLTSF-TLP 127
F LL F +L F+ F F F F++ I YF SF F LF F+ + F +
Sbjct: 113 FRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHF--LFFFFLCVCVFLSFL 170
Query: 126 FSL 118
FSL
Sbjct: 171 FSL 173
>SPAC27F1.02c |cdc8|fus4|tropomyosin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 161
Score = 28.7 bits (61), Expect = 0.77
Identities = 22/84 (26%), Positives = 46/84 (54%)
Frame = +1
Query: 211 ERRNEKIQMKKKIKAHEEKNVKQNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEK 390
E+ + K+++ ++ +K +++ TEK+ + + +R VQS + +M +QK +E
Sbjct: 82 EQLSRKVELLEEELETNDKLLRETTEKMRQTDVKAEHFERRVQSLERERDDM-EQKLEEM 140
Query: 391 AGKWDVPIPKVRAQADAEVFKVLK 462
K+ KV+A+ D EV + L+
Sbjct: 141 TDKY----TKVKAELD-EVHQALE 159
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/46 (23%), Positives = 26/46 (56%)
Frame = +1
Query: 427 AQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKPPKFERFI 564
A +++ K+L + K+ KR+V+++T + N T + +R++
Sbjct: 883 ASENSKTEKILLAASEKKLVGKRLVSELTKLSGNITLLESEIDRYV 928
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = -1
Query: 261 FVRFD-FLFHLNLFIAAFLIEYFSFDTAEFARLFSAFMRLTS 139
FV D FL+ LF LI +F+ F LFS F S
Sbjct: 171 FVSVDSFLYIFTLFPIRVLISFFTLSRCIFQGLFSTFFHRNS 212
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +1
Query: 208 KERRNEKIQMKKKIKAHEEKNVKQNTEKVAEGALPV 315
+ + NE + + + ++ E+N +NTE++AE + P+
Sbjct: 98 ENQENEADEAENEETSYSEQNHTENTEEIAEESRPL 133
>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 280 NTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPI 414
N K +E + +++D+ R+ +LSN+ K K+ VPI
Sbjct: 145 NITKYSEADKMMSTVEKDILVRSFLLSNLKKDSNNSNTFKFRVPI 189
>SPBC8E4.04 |||aldo/keto reductase involved in pentose catabolism
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 7.2
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +1
Query: 55 MPQNEYIERHQKL 93
+PQ EY+E+H+KL
Sbjct: 195 LPQTEYLEKHKKL 207
>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 600
Score = 25.0 bits (52), Expect = 9.5
Identities = 19/70 (27%), Positives = 34/70 (48%)
Frame = +1
Query: 334 VQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKVT 513
+Q R +VLS ++++ K++ V PK + + ++LKS + + T T
Sbjct: 40 LQPRLEVLSQLLRECPKQEL---TVNGPKFHSMY-LYISEILKSKAESLRIRNSLATLQT 95
Query: 514 FVGENFTRKP 543
F+ E RKP
Sbjct: 96 FLAELSVRKP 105
>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 612
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/33 (48%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -1
Query: 222 IAAFLIEYFSFDTAEFARLF-SAFMRLTSFTLP 127
IAAFL YFS AEF F S LT+ P
Sbjct: 229 IAAFLSSYFSPPNAEFDSTFCSTLSSLTNSEKP 261
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 25.0 bits (52), Expect = 9.5
Identities = 18/71 (25%), Positives = 36/71 (50%)
Frame = +1
Query: 187 IKAKIFNKERRNEKIQMKKKIKAHEEKNVKQNTEKVAEGALPVYLLDRDVQSRAKVLSNM 366
+K KI +E +E ++ K+ K E+N + +T VAE P + + + +++
Sbjct: 204 LKQKI--EEENDEILEDSKESKDENEENKETSTTNVAETDAP----EEETVDTVEEIADE 257
Query: 367 IKQKRKEKAGK 399
K KE++G+
Sbjct: 258 EKHSVKEESGE 268
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.0 bits (52), Expect = 9.5
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Frame = +1
Query: 199 IFNKERRNEKIQMKKKIKAHEEKNVKQNTEKVAEGALPVYLLD-------RDVQSRAKVL 357
+++ +++ + KK+KAH++K + E E A V D +DV++ A
Sbjct: 48 VYHVQQKKASHKRSKKLKAHQDKAESKVNEGKNEAAKVVKEEDLKSSETGKDVETAAAAA 107
Query: 358 SNMIKQKRKEKAGK 399
+ K+K+ +K K
Sbjct: 108 AAAKKKKKNKKKVK 121
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 25.0 bits (52), Expect = 9.5
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Frame = +2
Query: 5 FSLLVW*QRKLPNKQPTCRRTNILSAIKSFTVDG*IMRRENGSVKLVSLINALK----RR 172
FSLL + L + R+ + +K DG +ENG KL L + RR
Sbjct: 450 FSLLNFANPGLLGSRQEFRKNYEIPILKGRDADGTEKDKENGDAKLAELAKIVNRFIIRR 509
Query: 173 ANSAVSK 193
N +SK
Sbjct: 510 TNDILSK 516
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,324,816
Number of Sequences: 5004
Number of extensions: 43087
Number of successful extensions: 163
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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