Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_F22
(654 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82077-9|CAB04941.1| 259|Caenorhabditis elegans Hypothetical pr... 259 1e-69
AL032650-2|CAA21705.1| 259|Caenorhabditis elegans Hypothetical ... 259 1e-69
AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical... 33 0.18
Z81586-9|CAB04699.2| 676|Caenorhabditis elegans Hypothetical pr... 31 0.71
AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode poly... 30 1.6
AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ... 30 1.6
AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode poly... 30 1.6
AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode poly... 30 1.6
AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective spe... 30 1.6
AF026209-11|AAB71282.1| 353|Caenorhabditis elegans Seven tm rec... 30 1.6
Z82078-9|CAE11308.1| 949|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z81109-17|CAB03241.2| 497|Caenorhabditis elegans Hypothetical p... 29 2.2
U39999-12|AAA81110.1| 577|Caenorhabditis elegans Hypothetical p... 29 2.2
AL023844-13|CAE11312.1| 949|Caenorhabditis elegans Hypothetical... 29 2.2
Z68106-2|CAA92126.2| 402|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z35663-6|CAD82917.1| 606|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z35663-5|CAA84727.1| 681|Caenorhabditis elegans Hypothetical pr... 29 2.9
U80030-10|AAG24167.2| 378|Caenorhabditis elegans Serpentine rec... 29 3.8
Z50875-2|CAA90777.1| 1322|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z50874-13|CAA90775.1| 1322|Caenorhabditis elegans Hypothetical p... 28 6.7
U56964-6|AAB54035.1| 848|Caenorhabditis elegans Hypothetical pr... 28 6.7
U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily ass... 28 6.7
AF016683-7|AAM97999.1| 609|Caenorhabditis elegans Hypothetical ... 28 6.7
AY519857-1|AAR89638.1| 444|Caenorhabditis elegans nematode poly... 27 8.8
AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protei... 27 8.8
>Z82077-9|CAB04941.1| 259|Caenorhabditis elegans Hypothetical
protein W09C5.1 protein.
Length = 259
Score = 259 bits (635), Expect = 1e-69
Identities = 123/199 (61%), Positives = 152/199 (76%)
Frame = +1
Query: 55 MPQNEYIERHQKLYGRRLDYXXXXXXXXXXXXXXXXXXXXXLRGIKAKIFNKERRNEKIQ 234
MPQNE+IE H+K +GRRLD+ LRG KAK+++K+R +EK++
Sbjct: 1 MPQNEHIELHRKRHGRRLDHEERQRKKLARAAHDRSQMAKTLRGHKAKLYHKKRYSEKVE 60
Query: 235 MKKKIKAHEEKNVKQNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPI 414
M+K +K HEEK+ K E+ +GA+P YLLDR Q+ VLSNMIKQKRK+KAGK++VPI
Sbjct: 61 MRKLLKQHEEKDQKNTVEQPDKGAVPAYLLDRQQQTSGTVLSNMIKQKRKQKAGKFNVPI 120
Query: 415 PKVRAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKPPKFERFIRPMALRFKKA 594
P+VRA +DAE FKV+K+GK+ RK WKRMVTKVTFVGE+FTRKP KFERFIRPM LRFKKA
Sbjct: 121 PQVRAVSDAEAFKVVKTGKTNRKGWKRMVTKVTFVGESFTRKPAKFERFIRPMGLRFKKA 180
Query: 595 HVTHPELKATFCLPIIGVK 651
HVTHPEL+ TF LPI+GVK
Sbjct: 181 HVTHPELQTTFHLPIVGVK 199
>AL032650-2|CAA21705.1| 259|Caenorhabditis elegans Hypothetical
protein W09C5.1 protein.
Length = 259
Score = 259 bits (635), Expect = 1e-69
Identities = 123/199 (61%), Positives = 152/199 (76%)
Frame = +1
Query: 55 MPQNEYIERHQKLYGRRLDYXXXXXXXXXXXXXXXXXXXXXLRGIKAKIFNKERRNEKIQ 234
MPQNE+IE H+K +GRRLD+ LRG KAK+++K+R +EK++
Sbjct: 1 MPQNEHIELHRKRHGRRLDHEERQRKKLARAAHDRSQMAKTLRGHKAKLYHKKRYSEKVE 60
Query: 235 MKKKIKAHEEKNVKQNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVPI 414
M+K +K HEEK+ K E+ +GA+P YLLDR Q+ VLSNMIKQKRK+KAGK++VPI
Sbjct: 61 MRKLLKQHEEKDQKNTVEQPDKGAVPAYLLDRQQQTSGTVLSNMIKQKRKQKAGKFNVPI 120
Query: 415 PKVRAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRKPPKFERFIRPMALRFKKA 594
P+VRA +DAE FKV+K+GK+ RK WKRMVTKVTFVGE+FTRKP KFERFIRPM LRFKKA
Sbjct: 121 PQVRAVSDAEAFKVVKTGKTNRKGWKRMVTKVTFVGESFTRKPAKFERFIRPMGLRFKKA 180
Query: 595 HVTHPELKATFCLPIIGVK 651
HVTHPEL+ TF LPI+GVK
Sbjct: 181 HVTHPELQTTFHLPIVGVK 199
>AL132948-22|CAD31825.2| 1408|Caenorhabditis elegans Hypothetical
protein Y39B6A.30 protein.
Length = 1408
Score = 33.1 bits (72), Expect = 0.18
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +1
Query: 190 KAKIFNKERRNEKIQMKKKIKAHEEKNVKQNTE-KVAEGALPVYLLDRDVQSRAKVLSNM 366
K K +ERR E+ + KK+K +EK N + + E +++ + A+ L N+
Sbjct: 989 KIKAAEEERRKERAEDAKKVKEGQEKIAILNAKVQEKEDKSEARRKQKEMDNEAEKLLNV 1048
Query: 367 IKQKRKEK-AGKW 402
K+K K K KW
Sbjct: 1049 EKEKEKRKIIEKW 1061
>Z81586-9|CAB04699.2| 676|Caenorhabditis elegans Hypothetical
protein T05F1.11 protein.
Length = 676
Score = 31.1 bits (67), Expect = 0.71
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Frame = +1
Query: 208 KERRNEKIQMKKKIKAHEEKNVKQNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKE 387
+E R E+I+ KK+ + ++K + + AE + V L ++ + R +VL ++ KRK
Sbjct: 429 EEERLEEIRRKKE-EERKKKEEEDEKRRKAEESERVRKL-KEEEKRKRVLEEEMEMKRKN 486
Query: 388 KAGKWDVPIPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGE-NFTRKPPKFERFI 564
+ K + AE+ + + ++ +K K K+ + F + P F R +
Sbjct: 487 EEAKIKLEAEMREKAEQAEIKRREEKSRALKKLQKEETNKMEQMNNCTFLQNVPLF-RHL 545
Query: 565 RP 570
P
Sbjct: 546 HP 547
>AY519856-1|AAR89637.1| 1440|Caenorhabditis elegans nematode
polyprotein allergen related,post-translationnally
cleaved, the diverse 14.5 kDa cleavageproducts bind
lipids and retinol (164.6 kD) protein.
Length = 1440
Score = 29.9 bits (64), Expect = 1.6
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Frame = +1
Query: 241 KKIKAHEEKNVKQNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVP--I 414
+KIK H K+ ++ + +GA V + ++++ A+ + + + KE + DV I
Sbjct: 967 EKIKEHVASGDKEASKALVKGA--VDRQEGEIKTIAEKMFGICGEVYKESKSRRDVAAKI 1024
Query: 415 PK----VRAQADAEVFKVLKSGKSKRKAWKRMVTKV 510
K ++A+ E+ K+ K GKSK KR+ V
Sbjct: 1025 EKHLSWLQAEEKEEILKMSKEGKSKDDIKKRLFEMV 1060
>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
protein Y11D7A.14 protein.
Length = 1464
Score = 29.9 bits (64), Expect = 1.6
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Frame = +1
Query: 208 KERRNEKIQMKKKIKAHEEKNVKQNTEKVAEGALPVYLLDRDVQSRAKVLSNM--IKQKR 381
+E NEK++++++I+ E KN E + E LLDR+ + KV + ++++
Sbjct: 831 EELENEKLKLEEEIQEMEIKN----EEALKENLKLSMLLDREKSEKVKVQKELEEVEKQG 886
Query: 382 KEKAGKWDVPIPKV--RAQADAEVFKVLKSGKSKRKAWKRMVTKVTFVGENFTRK 540
+EK + + K + + E+F VL + K + V K+ V + RK
Sbjct: 887 REKLLEKEREFRKTMEEMEQNEEIFNVL---ERKYNEQHKKVMKMNDVLREYERK 938
>AF106581-2|AAR25643.1| 1198|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform c protein.
Length = 1198
Score = 29.9 bits (64), Expect = 1.6
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Frame = +1
Query: 241 KKIKAHEEKNVKQNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVP--I 414
+KIK H K+ ++ + +GA V + ++++ A+ + + + KE + DV I
Sbjct: 725 EKIKEHVASGDKEASKALVKGA--VDRQEGEIKTIAEKMFGICGEVYKESKSRRDVAAKI 782
Query: 415 PK----VRAQADAEVFKVLKSGKSKRKAWKRMVTKV 510
K ++A+ E+ K+ K GKSK KR+ V
Sbjct: 783 EKHLSWLQAEEKEEILKMSKEGKSKDDIKKRLFEMV 818
>AF106581-1|AAC78208.1| 1440|Caenorhabditis elegans Nematode
polyprotein allergen relatedprotein 1, isoform a protein.
Length = 1440
Score = 29.9 bits (64), Expect = 1.6
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Frame = +1
Query: 241 KKIKAHEEKNVKQNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEKAGKWDVP--I 414
+KIK H K+ ++ + +GA V + ++++ A+ + + + KE + DV I
Sbjct: 967 EKIKEHVASGDKEASKALVKGA--VDRQEGEIKTIAEKMFGICGEVYKESKSRRDVAAKI 1024
Query: 415 PK----VRAQADAEVFKVLKSGKSKRKAWKRMVTKV 510
K ++A+ E+ K+ K GKSK KR+ V
Sbjct: 1025 EKHLSWLQAEEKEEILKMSKEGKSKDDIKKRLFEMV 1060
>AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective
spermatogenesis protein15 protein.
Length = 1219
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Frame = +1
Query: 223 EKIQMKKKIKAHEEKNVKQNTEKVAEGALPVYLLDRDVQSR--AKVLSNMIKQKRKEKAG 396
E+ + ++K A +EK +++ E+ E A Y L ++Q + A +K++ KE+
Sbjct: 942 ERREAEEKAAAEQEKILRRKMEEEREKAQKEYELQLEMQKQKLAAEAEEEVKRRNKEERD 1001
Query: 397 KWDVPIPKVRAQAD 438
+ D + A +D
Sbjct: 1002 RLDAAVSSRLASSD 1015
>AF026209-11|AAB71282.1| 353|Caenorhabditis elegans Seven tm
receptor protein 262 protein.
Length = 353
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/62 (25%), Positives = 33/62 (53%)
Frame = -1
Query: 312 RQGTFGDLLCVLFDILLFVRFDFLFHLNLFIAAFLIEYFSFDTAEFARLFSAFMRLTSFT 133
++ F + L D LLFV F F +++ F+ +FS + + ++F +++ + FT
Sbjct: 77 KESIFPATMSCLMD-LLFVGF-FGTSMSILALHFIYRFFSVTNSRYLKIFDSWLIIPIFT 134
Query: 132 LP 127
+P
Sbjct: 135 VP 136
>Z82078-9|CAE11308.1| 949|Caenorhabditis elegans Hypothetical
protein Y48A6B.11b protein.
Length = 949
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +1
Query: 205 NKERRNEKIQMKKKIKAHEEKNVKQNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKR- 381
N E+ + + ++ K + H EK +N E + EG PV++ + Q + + +R
Sbjct: 18 NDEKPAKSVLLEPKYRDHHEKISFRNKENMEEGEKPVFVSMANPQPTREDYERYDEDRRL 77
Query: 382 KEKAGKWDVPIPKVRAQADAE 444
K+KA D+ I + R A E
Sbjct: 78 KDKAR--DLRIARRRNSATPE 96
>Z81109-17|CAB03241.2| 497|Caenorhabditis elegans Hypothetical
protein R10D12.10 protein.
Length = 497
Score = 29.5 bits (63), Expect = 2.2
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 11/110 (10%)
Frame = +1
Query: 190 KAKIFNKERRNEKIQMKKKIKAHEEK--NVKQNTEKVAEGALPVYLLDRDVQSRAKVLSN 363
K K +KE+ EK + K+KIK E+K ++++ TE+ +E A L + + + L
Sbjct: 389 KEKEKDKEKEREKRKSKEKIKEKEKKMGSLEKTTERTSE-APSTNALPKAKPKKIRTLPP 447
Query: 364 MIKQKRKEKAGKWDV-------PIPKVRAQADAEVFK--VLKSGKSKRKA 486
KQK + + V PI K + A+V K V G SK+KA
Sbjct: 448 --KQKHTKTSSTSSVSHQTPPSPIKKPSPKLPAQVKKKTVSTGGGSKQKA 495
>U39999-12|AAA81110.1| 577|Caenorhabditis elegans Hypothetical
protein F41G3.3 protein.
Length = 577
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +1
Query: 256 HEEKNVKQNTEKVAEGALPVYLLDRDVQSRAKVLS--NMIKQKRKEKAGKWD 405
+ KNV + EK+ G P+ + D D+ A V + +Q++ +KA +W+
Sbjct: 305 NSSKNVAEVVEKMNNGDWPIQIEDEDIPPSAAVNNPKRGYQQQQADKARQWE 356
>AL023844-13|CAE11312.1| 949|Caenorhabditis elegans Hypothetical
protein Y48A6B.11b protein.
Length = 949
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +1
Query: 205 NKERRNEKIQMKKKIKAHEEKNVKQNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKR- 381
N E+ + + ++ K + H EK +N E + EG PV++ + Q + + +R
Sbjct: 18 NDEKPAKSVLLEPKYRDHHEKISFRNKENMEEGEKPVFVSMANPQPTREDYERYDEDRRL 77
Query: 382 KEKAGKWDVPIPKVRAQADAE 444
K+KA D+ I + R A E
Sbjct: 78 KDKAR--DLRIARRRNSATPE 96
>Z68106-2|CAA92126.2| 402|Caenorhabditis elegans Hypothetical
protein F41E7.3 protein.
Length = 402
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -1
Query: 213 FLIEYFSFDTAEFARLFSAFMRLTSFTLPFSLLII*PSTVKLLMALN 73
FLI + AEF +F + + F LPF L+ I S +K+ + LN
Sbjct: 190 FLICSEDWSNAEFRSIFGIVVMILQFILPFVLIAI--SYIKIWLFLN 234
>Z35663-6|CAD82917.1| 606|Caenorhabditis elegans Hypothetical
protein T04A8.7b protein.
Length = 606
Score = 29.1 bits (62), Expect = 2.9
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 17/91 (18%)
Frame = +1
Query: 379 RKEKAGKWDVPIP-KVRAQADAEVFKVLKSGKSKRKA-------WKRMVT----KVTFV- 519
+KE+ GKW + +P K V+K S+ A W VT K T +
Sbjct: 20 KKEEHGKWSITVPAKEDGSCPIPHNSVIKIAVSRHGATHFKLSPWATFVTCPNPKETVIY 79
Query: 520 GENFTRKPPKFE----RFIRPMALRFKKAHV 600
+NF P K++ R RP +LR +AHV
Sbjct: 80 HQNFWNPPEKYQLKEARPARPASLRIYEAHV 110
>Z35663-5|CAA84727.1| 681|Caenorhabditis elegans Hypothetical
protein T04A8.7a protein.
Length = 681
Score = 29.1 bits (62), Expect = 2.9
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 17/91 (18%)
Frame = +1
Query: 379 RKEKAGKWDVPIP-KVRAQADAEVFKVLKSGKSKRKA-------WKRMVT----KVTFV- 519
+KE+ GKW + +P K V+K S+ A W VT K T +
Sbjct: 95 KKEEHGKWSITVPAKEDGSCPIPHNSVIKIAVSRHGATHFKLSPWATFVTCPNPKETVIY 154
Query: 520 GENFTRKPPKFE----RFIRPMALRFKKAHV 600
+NF P K++ R RP +LR +AHV
Sbjct: 155 HQNFWNPPEKYQLKEARPARPASLRIYEAHV 185
>U80030-10|AAG24167.2| 378|Caenorhabditis elegans Serpentine
receptor, class w protein136 protein.
Length = 378
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = -2
Query: 617 FSSGCVTWAFLNLSAIGLMNRSNLGGLRVKFSPTNVTLVTMRFQAFLFDLP 465
FS C TW FL+++ I + N L+ K T F FL LP
Sbjct: 122 FSRRCSTWLFLSIAFIRTLIVRNPMNLKYKQLSNQPTAFYTIFGVFLLSLP 172
>Z50875-2|CAA90777.1| 1322|Caenorhabditis elegans Hypothetical
protein T08A11.2 protein.
Length = 1322
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 322 LDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQAD 438
++R++ RAK + + ++K G+WD P A +D
Sbjct: 169 VERELADRAKAGELHVTGQPEKKKGRWDAEAPSTDASSD 207
>Z50874-13|CAA90775.1| 1322|Caenorhabditis elegans Hypothetical
protein T08A11.2 protein.
Length = 1322
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 322 LDRDVQSRAKVLSNMIKQKRKEKAGKWDVPIPKVRAQAD 438
++R++ RAK + + ++K G+WD P A +D
Sbjct: 169 VERELADRAKAGELHVTGQPEKKKGRWDAEAPSTDASSD 207
>U56964-6|AAB54035.1| 848|Caenorhabditis elegans Hypothetical
protein F52E4.7 protein.
Length = 848
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 181 RGIKAKIFNKERRNEKIQMKKKIKAHEEKNVKQNTEKV 294
RGI+ + +++ +I++KK I H K VK+ E++
Sbjct: 745 RGIRPDEISYQQQFSRIELKKVISQHPGKEVKKGLEQL 782
>U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily assigned
gene nameprotein 213 protein.
Length = 1437
Score = 27.9 bits (59), Expect = 6.7
Identities = 22/86 (25%), Positives = 40/86 (46%)
Frame = +1
Query: 190 KAKIFNKERRNEKIQMKKKIKAHEEKNVKQNTEKVAEGALPVYLLDRDVQSRAKVLSNMI 369
K K+ +++ + + + KKIK +KN ++EKV + V+ + + +A V N
Sbjct: 1174 KEKVVDEKDKADGEPVDKKIKVDSKKNGTTSSEKVVKDD-EVHQNGSETEKKATV-DNKE 1231
Query: 370 KQKRKEKAGKWDVPIPKVRAQADAEV 447
++KR K+ K D EV
Sbjct: 1232 RKKRPGKSSHGSKESKKEPTTEDGEV 1257
>AF016683-7|AAM97999.1| 609|Caenorhabditis elegans Hypothetical
protein K09F6.9 protein.
Length = 609
Score = 27.9 bits (59), Expect = 6.7
Identities = 20/63 (31%), Positives = 32/63 (50%)
Frame = +1
Query: 211 ERRNEKIQMKKKIKAHEEKNVKQNTEKVAEGALPVYLLDRDVQSRAKVLSNMIKQKRKEK 390
E R E ++ +K+ EEK K+N E+V + R ++RAK L K++ +EK
Sbjct: 280 EARAEALEKEKR--EQEEKQKKENLERVEKERREHIERHRQAEARAKALEKE-KRELEEK 336
Query: 391 AGK 399
K
Sbjct: 337 QKK 339
>AY519857-1|AAR89638.1| 444|Caenorhabditis elegans nematode
polyprotein allergen related,post-translationnally
cleaved, the diverse 14.5 kDa cleavageproducts bind
lipids and retinol (51.7 kD) protein.
Length = 444
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 373 QKRKEKAGKWDVPIPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKV 510
+ R++ A K + + ++A+ E+ K+ K GKSK KR+ V
Sbjct: 19 KSRRDVAAKIEKHLSWLQAEEKEEILKMSKEGKSKDDIKKRLFEMV 64
>AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protein
protein.
Length = 1198
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +1
Query: 373 QKRKEKAGKWDVPIPKVRAQADAEVFKVLKSGKSKRKAWKRMVTKV 510
+ R++ A K + + ++A+ E+ K+ K GKSK KR+ V
Sbjct: 770 KSRRDVAAKIEKHLSWLQAEEKEEILKMSKEGKSKDDIKKRLFEMV 815
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,824,853
Number of Sequences: 27780
Number of extensions: 238819
Number of successful extensions: 985
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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