Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_F20
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    26   5.0  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   6.6  
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.7  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   8.7  

>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = -3

Query: 536 ALXTPSPLFQALDPVGLQFSGIGTQSPGTVCPGTNDP 426
           ++  P+     L  +   F   G  +PGT  PGT  P
Sbjct: 456 SIAVPTTSSMPLQGMPTMFGAPGVSAPGTEAPGTGTP 492


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/42 (23%), Positives = 23/42 (54%)
 Frame = +1

Query: 70  TTSLKPPEFHNLKCFNLYFYVRKLCIVFFLIANRDIESGGLT 195
           T  LK     NL   +LY+++ ++C+    ++ +++ +  LT
Sbjct: 468 TIDLKKDRIPNLCAVSLYYHLIRICLNRPFLSRKEVTANDLT 509


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1379

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 206  PHPNVSPPDSMSRFAIKKNTIHSLRT*KYKLKHF 105
            P  + +PP   ++ +I K + H+LR  + K KHF
Sbjct: 1167 PAVHENPPPLKTKQSIAKPSPHTLRVPQKKHKHF 1200


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 13/74 (17%)
 Frame = +1

Query: 283 CSLVLPKMHIEVQVALNFVISY-LYNKLPRRRVNIFGE-----------ELXKALKDKFR 426
           C +++  +H++VQ+  N +  +  YN     R+N FG            E+   +   ++
Sbjct: 296 CLVIMAHLHVDVQIPPNILSMFPSYND----RLNAFGPLKFDALLNFITEMRNVVDQLYQ 351

Query: 427 GS-LVPGQTVPGLC 465
            S L P   VPGLC
Sbjct: 352 KSTLQPNDAVPGLC 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,550
Number of Sequences: 5004
Number of extensions: 51102
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)