Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_F20
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227... 30 1.7
01_06_1759 + 39689410-39689573,39689728-39689923,39690014-396901... 30 1.7
03_02_0014 + 4955759-4956106,4956229-4956277,4956372-4956579,495... 29 2.2
01_06_0298 + 28301032-28302408 29 3.9
08_02_0622 + 19422001-19422330,19422411-19422459,19422552-194227... 28 6.8
06_02_0276 + 13678457-13678734,13679592-13679931,13680025-136802... 28 6.8
04_03_0532 - 16824394-16824447,16824545-16824665,16824748-168248... 28 6.8
05_04_0386 + 20822376-20822982,20823715-20824244,20824315-20825127 27 8.9
01_07_0116 + 41168750-41170054 27 8.9
01_07_0114 + 41161923-41163251 27 8.9
>04_03_0812 -
19922208-19922357,19922448-19922564,19922681-19922752,
19922864-19923993,19924939-19925008,19925125-19925199
Length = 537
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +1
Query: 373 RVNIFGEELXKA---LKDKFRGSLVPGQTVPGLCVPMPENW 486
R+ + GEE KA D F SL+P +T+P PE+W
Sbjct: 190 RILVDGEEKKKANFLSADDFEPSLIPSKTIPDPDDKKPEDW 230
>01_06_1759 +
39689410-39689573,39689728-39689923,39690014-39690103,
39690221-39690277,39690391-39690460,39690747-39690811,
39691408-39691462,39691704-39691831,39691919-39691950,
39692205-39692274,39692723-39692824,39692921-39693010,
39693084-39693232,39693620-39693731,39695332-39695412,
39695481-39695705,39695815-39695937,39696021-39696137
Length = 641
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = -3
Query: 272 ENRWCLPLGDRRLTKPLCQQNAPHPNVSPPDSMSRFAIKKNTIHSLRT 129
EN + LG L P + AP P D S+F KK H R+
Sbjct: 488 ENSFLRALGHIELDLPEAPEKAPKPPAQAVDPFSKFGPKKEISHIFRS 535
>03_02_0014 +
4955759-4956106,4956229-4956277,4956372-4956579,
4956700-4956874,4956981-4957046,4957150-4957263,
4957366-4957482,4957589-4957715,4957826-4958112,
4958209-4958399,4958937-4959022,4959117-4959193,
4959330-4959473
Length = 662
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 418 KFRGSLVPGQTVPGLCVP 471
KFRG LV G T+ LC+P
Sbjct: 98 KFRGDLVSGLTIASLCIP 115
>01_06_0298 + 28301032-28302408
Length = 458
Score = 28.7 bits (61), Expect = 3.9
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Frame = +2
Query: 344 LTYTISCQDG----ESTSSGKNXRRHSRTNSGGHWYPDRP---CRGSAFRCLKTGGP--L 496
+T+T + +DG + G R R GG W PD P G R ++ GP L
Sbjct: 40 VTFTTALRDGIRVFDDGDGGGGGVRVERLRGGGMWEPDDPRLRIPGDMARHVEAAGPAAL 99
Query: 497 DPVLEXAARESGVPVRDVL 553
+ ++ A E+G PV V+
Sbjct: 100 EELIRREA-EAGRPVACVV 117
>08_02_0622 +
19422001-19422330,19422411-19422459,19422552-19422759,
19422832-19423006,19423101-19423166,19423264-19423377,
19423473-19423589,19423677-19423803,19423893-19424179,
19424279-19424469,19424571-19424656,19424749-19424825,
19425057-19425200
Length = 656
Score = 27.9 bits (59), Expect = 6.8
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 418 KFRGSLVPGQTVPGLCVP 471
KF+G L+ G T+ LC+P
Sbjct: 92 KFKGDLIAGLTIASLCIP 109
>06_02_0276 +
13678457-13678734,13679592-13679931,13680025-13680243,
13680328-13680420
Length = 309
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +1
Query: 187 GLTFGWGAFC*HSGLVNRRSPSGKHHRFSPYDCSLVLPKMH 309
G FGW A C G++ SG +++ + +++ P H
Sbjct: 260 GWRFGWIAICDPKGILKETKLSGFVPKYNDFSTNILFPTNH 300
>04_03_0532 -
16824394-16824447,16824545-16824665,16824748-16824875,
16825457-16825603,16825682-16825807,16825895-16826160,
16826259-16826453,16826577-16826657,16826756-16826830,
16827270-16827530,16827633-16827719,16827844-16828060
Length = 585
Score = 27.9 bits (59), Expect = 6.8
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = +2
Query: 356 ISCQDGESTSSGKNXRRHSRTNSGGHWYPDRPCRGSAFRCLKTGGPLDPVLEXAARESGV 535
++ + GE GK R G W DRP G + TG LD ++R+ G
Sbjct: 36 VAMKVGEEKEIGKQGLRKRLLKEGEGW--DRPESGDEVQVHYTGTLLDGTKFDSSRDRGT 93
Query: 536 PVR 544
P +
Sbjct: 94 PFK 96
>05_04_0386 + 20822376-20822982,20823715-20824244,20824315-20825127
Length = 649
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/27 (48%), Positives = 21/27 (77%)
Frame = +1
Query: 91 EFHNLKCFNLYFYVRKLCIVFFLIANR 171
EF +LK +L+F++R + I+F LIAN+
Sbjct: 543 EFLHLKG-DLHFFLRSMIIMFILIANK 568
>01_07_0116 + 41168750-41170054
Length = 434
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +2
Query: 353 TISCQDGESTSSGKNXRRHSRTNSGGHWYPDRPCRGSAFRCLKTGGPLDPV 505
T+SC G ++ + R R GG ++ R GS RC T P +PV
Sbjct: 78 TVSCLSGACGAANQQQPRRCRYVDGGWFWSGREA-GS--RCACTAHPFNPV 125
>01_07_0114 + 41161923-41163251
Length = 442
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +2
Query: 353 TISCQDGESTSSGKNXRRHSRTNSGGHWYPDRPCRGSAFRCLKTGGPLDPV 505
T+SC G ++ + R R GG ++ R GS RC T P +PV
Sbjct: 79 TVSCLSGTCGAANQQQPRRCRYVDGGWFWSGREA-GS--RCACTAHPFNPV 126
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,200,829
Number of Sequences: 37544
Number of extensions: 407445
Number of successful extensions: 1037
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -