Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_F20
         (616 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81033-2|CAB02725.1|  263|Caenorhabditis elegans Hypothetical pr...    40   0.001
AJ011777-1|CAA09770.1|  263|Caenorhabditis elegans FOG-3 protein...    40   0.001
U97405-3|AAB53008.1|  192|Caenorhabditis elegans Hypothetical pr...    31   0.86 
Z81132-3|CAB03434.1|  365|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z47811-4|CAD57701.1|  422|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z81096-8|CAD54149.2|  922|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z81096-6|CAJ80827.1|  691|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z81096-4|CAB54264.2|  689|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z81096-3|CAB54265.2|  747|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z81094-7|CAB03153.2|  960|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z78065-11|CAD54155.2|  922|Caenorhabditis elegans Hypothetical p...    28   6.1  
Z78065-10|CAJ80826.1|  691|Caenorhabditis elegans Hypothetical p...    28   6.1  
Z78065-7|CAB54297.2|  689|Caenorhabditis elegans Hypothetical pr...    28   6.1  
Z78065-6|CAB54298.2|  747|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U70849-6|ABD63227.1|  284|Caenorhabditis elegans Phosphatidylser...    27   8.1  
U70849-5|AAF99922.2|  400|Caenorhabditis elegans Phosphatidylser...    27   8.1  

>Z81033-2|CAB02725.1|  263|Caenorhabditis elegans Hypothetical
           protein C03C11.2 protein.
          Length = 263

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 19/40 (47%), Positives = 24/40 (60%)
 Frame = +1

Query: 304 MHIEVQVALNFVISYLYNKLPRRRVNIFGEELXKALKDKF 423
           M+ EV+  +NFV  YL+  +PRR V IFG EL   L   F
Sbjct: 1   MYTEVRELVNFVCRYLFGHIPRRPVGIFGAELGNYLVSHF 40



 Score = 32.7 bits (71), Expect = 0.21
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +2

Query: 434 WYPDRPCRGSAFRCLKTGGPLDPVLEXAARESGVPVRDVLXHLPRDLAVWVDPXEVSYRI 613
           W    P  G   R + T   L      +A E+GVP  DVL  LP ++ ++ +P  V  R+
Sbjct: 44  WDVHHPKNGEMKRMINTTTSL--CFASSAEEAGVPPSDVLRLLPTNMIIFANPGHVFVRL 101


>AJ011777-1|CAA09770.1|  263|Caenorhabditis elegans FOG-3 protein
           protein.
          Length = 263

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 19/40 (47%), Positives = 24/40 (60%)
 Frame = +1

Query: 304 MHIEVQVALNFVISYLYNKLPRRRVNIFGEELXKALKDKF 423
           M+ EV+  +NFV  YL+  +PRR V IFG EL   L   F
Sbjct: 1   MYTEVRELVNFVCRYLFGHIPRRPVGIFGAELGNYLVSHF 40



 Score = 32.7 bits (71), Expect = 0.21
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +2

Query: 434 WYPDRPCRGSAFRCLKTGGPLDPVLEXAARESGVPVRDVLXHLPRDLAVWVDPXEVSYRI 613
           W    P  G   R + T   L      +A E+GVP  DVL  LP ++ ++ +P  V  R+
Sbjct: 44  WDVHHPKNGEMKRMINTTTSL--CFASSAEEAGVPPSDVLRLLPTNMIIFANPGHVFVRL 101


>U97405-3|AAB53008.1|  192|Caenorhabditis elegans Hypothetical
           protein T09B4.6 protein.
          Length = 192

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 304 MHIEVQVALNFVISYLYNKLPRRRVNIFGEELXKALKD 417
           M +EVQ A+ F+ ++++ ++PR RV  F   L   L +
Sbjct: 1   MILEVQEAVQFLSTFMFGRIPRSRVKSFCGHLSSLLSE 38


>Z81132-3|CAB03434.1|  365|Caenorhabditis elegans Hypothetical
           protein T26E4.4 protein.
          Length = 365

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
 Frame = +1

Query: 319 QVALNFVISYLYNKLPRRRVNIFGEELX--KAL-KDKF-RGSLVPGQTVPGLCVPMPEN 483
           + A +F++ +      R  V +FG ++   KA+ +D+    S++P +T P L  P+PEN
Sbjct: 243 RAATDFLVKHYQKWHYRTTVVVFGNDVNFSKAVFEDRVSNSSVIPNRTTPPLNFPIPEN 301


>Z47811-4|CAD57701.1|  422|Caenorhabditis elegans Hypothetical
           protein K02C4.5 protein.
          Length = 422

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +2

Query: 377 STSSGKNXRRHSRT-NSGGHWYPDRPCRGSAFR 472
           S  S  N  +HS T NSG  W+P  P R S  R
Sbjct: 121 SIHSHLNSTKHSETENSGRRWFPKLPERKSELR 153


>Z81096-8|CAD54149.2|  922|Caenorhabditis elegans Hypothetical
           protein T09E8.1c protein.
          Length = 922

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 229 LVNRRSPSGKHHRFSPYDCSLVLPKMHIEVQVALNFV 339
           L N  SP+G   +FSP D S+  P  H+  +V ++ V
Sbjct: 376 LNNGGSPNGVRSQFSPSDLSIHTPVHHVGSRVRVSSV 412


>Z81096-6|CAJ80827.1|  691|Caenorhabditis elegans Hypothetical
           protein T09E8.1f protein.
          Length = 691

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 229 LVNRRSPSGKHHRFSPYDCSLVLPKMHIEVQVALNFV 339
           L N  SP+G   +FSP D S+  P  H+  +V ++ V
Sbjct: 145 LNNGGSPNGVRSQFSPSDLSIHTPVHHVGSRVRVSSV 181


>Z81096-4|CAB54264.2|  689|Caenorhabditis elegans Hypothetical
           protein T09E8.1b protein.
          Length = 689

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 229 LVNRRSPSGKHHRFSPYDCSLVLPKMHIEVQVALNFV 339
           L N  SP+G   +FSP D S+  P  H+  +V ++ V
Sbjct: 143 LNNGGSPNGVRSQFSPSDLSIHTPVHHVGSRVRVSSV 179


>Z81096-3|CAB54265.2|  747|Caenorhabditis elegans Hypothetical
           protein T09E8.1a protein.
          Length = 747

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 229 LVNRRSPSGKHHRFSPYDCSLVLPKMHIEVQVALNFV 339
           L N  SP+G   +FSP D S+  P  H+  +V ++ V
Sbjct: 201 LNNGGSPNGVRSQFSPSDLSIHTPVHHVGSRVRVSSV 237


>Z81094-7|CAB03153.2|  960|Caenorhabditis elegans Hypothetical
           protein F58G11.2 protein.
          Length = 960

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 371 GESTSSGKNXRRHSRTNSGGHWYPDRPCRGS 463
           G S    ++ R HSR N GG  Y +R  RG+
Sbjct: 67  GNSYGRREDDRSHSRDNHGGSRYGERDDRGN 97


>Z78065-11|CAD54155.2|  922|Caenorhabditis elegans Hypothetical
           protein T09E8.1c protein.
          Length = 922

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 229 LVNRRSPSGKHHRFSPYDCSLVLPKMHIEVQVALNFV 339
           L N  SP+G   +FSP D S+  P  H+  +V ++ V
Sbjct: 376 LNNGGSPNGVRSQFSPSDLSIHTPVHHVGSRVRVSSV 412


>Z78065-10|CAJ80826.1|  691|Caenorhabditis elegans Hypothetical
           protein T09E8.1f protein.
          Length = 691

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 229 LVNRRSPSGKHHRFSPYDCSLVLPKMHIEVQVALNFV 339
           L N  SP+G   +FSP D S+  P  H+  +V ++ V
Sbjct: 145 LNNGGSPNGVRSQFSPSDLSIHTPVHHVGSRVRVSSV 181


>Z78065-7|CAB54297.2|  689|Caenorhabditis elegans Hypothetical
           protein T09E8.1b protein.
          Length = 689

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 229 LVNRRSPSGKHHRFSPYDCSLVLPKMHIEVQVALNFV 339
           L N  SP+G   +FSP D S+  P  H+  +V ++ V
Sbjct: 143 LNNGGSPNGVRSQFSPSDLSIHTPVHHVGSRVRVSSV 179


>Z78065-6|CAB54298.2|  747|Caenorhabditis elegans Hypothetical
           protein T09E8.1a protein.
          Length = 747

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +1

Query: 229 LVNRRSPSGKHHRFSPYDCSLVLPKMHIEVQVALNFV 339
           L N  SP+G   +FSP D S+  P  H+  +V ++ V
Sbjct: 201 LNNGGSPNGVRSQFSPSDLSIHTPVHHVGSRVRVSSV 237


>U70849-6|ABD63227.1|  284|Caenorhabditis elegans Phosphatidylserine
           receptor familyprotein 1, isoform b protein.
          Length = 284

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -3

Query: 275 GENRWCL--PLGDRRLTKPLCQQNAPHPN 195
           G  RW L  P+  R L KP+  +   HP+
Sbjct: 91  GHKRWVLIPPIAPRDLVKPMAHEKGKHPD 119


>U70849-5|AAF99922.2|  400|Caenorhabditis elegans Phosphatidylserine
           receptor familyprotein 1, isoform a protein.
          Length = 400

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -3

Query: 275 GENRWCL--PLGDRRLTKPLCQQNAPHPN 195
           G  RW L  P+  R L KP+  +   HP+
Sbjct: 207 GHKRWVLIPPIAPRDLVKPMAHEKGKHPD 235


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,549,057
Number of Sequences: 27780
Number of extensions: 315711
Number of successful extensions: 680
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)